Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 108800945

GI number: 108800945

Start: 4247344

End: 4248180

Strand: Reverse

Name: ycjP [C]

Synonym: Mmcs_3981

Alternate gene names: 108800945

Gene position: 4248180-4247344 (Counterclockwise)

Preceding gene: 108800946

Following gene: 108800944

Centisome position: 74.46

GC content: 64.16

Gene sequence:

>837_bases
ATGAACGAGCGGGTGACCGCCGGTCGCGCGAGCGGATGGGCCGTCGTGAACATCCTCGTGGTGATCTACGCGCTGCTGCC
GGTGCTGTGGATCCTGAGCCTGTCGCTCAAGCCGACGTCGAGCGTCAAGGACGGCAAGCTGATCCCGACCGAGATCACCT
TCGACAACTACAAGGGCATCTTCCAGGGCAACGCGTTCACGTCCGCGCTGATCAACTCCATCGGCATCGGTCTGATCACC
ACGGTGATCGCGGTGGTGGTCGGCGGGATGGCCGCATACGCGGTGGCGCGGTTGACGTTCCCCGGTAAGCGCCTGTTGGT
CGGCGTTGCGCTGCTGATCGCAATGTTCCCCCAGATTTCGCTGGTGACACCGCTTTTCAACATCGAGCGCTCGATCGGCC
TGTTCGACACGTGGCCCGGCCTGATCATCCCGTACATCACCTTCGCGTTGCCGTTGGCGATCTACACGCTCTCGGCGTTC
TTCCGCGAGATCCCCTGGGATCTGGAGAAGGCGGCGAAGATGGACGGTGCGACGCCGGCGCAGGCGTTCCGGAAAGTCAT
TGCGCCGCTGGCGGCGCCCGGCATCGTCACCGCCGCGATCCTGGTGTTCATCTTCGCGTGGAACGATCTGCTGCTCGCGC
TGTCGCTGACCGCGACGCAGCGGGCGATCACAGCGCCGGTGGCGATCGCGAACTTCACGGGCAGTTCGCAATTCGAGGAA
CCGACCGGGTCGATCGCGGCGGGCGCGATGGTCATCACGATCCCGATCATTGTCTTTGTTCTCATCTTCCAGCGACGGAT
CGTCGCCGGGCTGACGTCCGGTGCGGTGAAGGGGTAG

Upstream 100 bases:

>100_bases
GCTCAGCGTCTTGATATTCCTGTGCGTGGCGATCATCGCGTTCATCTACATCAAGCTGTTCGGAGCGTCTGCGCCCGGCT
CGGACGAGGAGAGGCGTTAG

Downstream 100 bases:

>100_bases
CGCGATGGCCGAAATCGTCTTGGACAAGGTGACCAAGAGTTATCCGAACGGCGCGACGGCGGTGAAGGAACTGTCGATCA
CGATCGCCGACGGCGAGTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNERVTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGNAFTSALINSIGIGLIT
TVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTPLFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAF
FREIPWDLEKAAKMDGATPAQAFRKVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEE
PTGSIAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG

Sequences:

>Translated_278_residues
MNERVTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGNAFTSALINSIGIGLIT
TVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTPLFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAF
FREIPWDLEKAAKMDGATPAQAFRKVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEE
PTGSIAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG
>Mature_278_residues
MNERVTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGNAFTSALINSIGIGLIT
TVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTPLFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAF
FREIPWDLEKAAKMDGATPAQAFRKVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEE
PTGSIAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1036/38/39. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=251, Percent_Identity=33.0677290836653, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790464, Length=273, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=24.3589743589744, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787368, Length=157, Percent_Identity=24.8407643312102, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29532; Mature: 29532

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERVTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCE
FQGNAFTSALINSIGIGLITTVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQIS
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
LVTPLFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPA
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH
QAFRKVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCC
PTGSIAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNERVTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCE
FQGNAFTSALINSIGIGLITTVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQIS
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
LVTPLFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPA
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH
QAFRKVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCC
PTGSIAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]