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The map label for this gene is yfdE [H]

Identifier: 108800707

GI number: 108800707

Start: 3994538

End: 3995746

Strand: Reverse

Name: yfdE [H]

Synonym: Mmcs_3742

Alternate gene names: 108800707

Gene position: 3995746-3994538 (Counterclockwise)

Preceding gene: 108800708

Following gene: 108800706

Centisome position: 70.03

GC content: 69.31

Gene sequence:

>1209_bases
ATGCAGACCCTCCCTCCGCTGGCCGGCATCACCGTCGTGACGCTGGAACAGGCGGTGTCCGCACCGATGTGCACGCGCGT
ACTCGCCGACTTCGGTGCCCGGGTGATCAAGATCGAGAACCCCAAGGGCGGTGACTTCGCCCGCCACTACGACGACGTGG
TCCACGGTCAGGCTGCCCACTTCGTCTGGGCCAACCGCGGCAAGGAGTCGCTGAGCCTCGACCTGAAATCGCCCGCGGGC
ATGGACATCCTGCACCGGCTGCTCGACGGCGCCGACGTGCTGGTGTCCAACCTCGCCCCCGGCGCGACGGCCCGGATGGG
CATCGGCGCCGCCGACCTCAAACACCGGCATCCGCGGGTGATCCCGGTCGAGATCGACGGGTACGGCGCCGGCGGGCCGA
TCTCGCACAAGCGCGCCTACGATCTGCTGATCCAGGCCGAATCGGGTGCGTGTGCGGTCACCGGTTACCCGGGGATGCCG
GCCAAACCCGGTCCACCGGTGGCCGACATCTCGACCGGGCTGTACGCCGCGCTGTCCATCCTGGCGCTGCTGTATGCGCG
CAAGGGGGACGGCGCCGAACCGGCCCCCGCGGTCGCGGTCAGCCTGTTCGACACCATGACCGACATCATGGGTTACCAGC
TGACCTACACCCAGCACTCCGGTGTCGACCAGCAACCGCTGGGGATGAGCTCGCCGGCGGTCGCGCCCTACGGCGCCTTT
CCGACCAGGGACGGGCAGACGGTGGTGCTGGGCACCACCAACGACCGGGAGTGGCAGCGGCTGGCTCGGGAGATCATCGA
GCGCCGGGACCTGGCCGACGATCCGATGTTCGCGAGCAACTCCGACCGGTGCGCACACCGCGACATCCTCAACGAGGCGA
TCGGATCCTGGTGTGCGCAACACGATCTCGCGCACATCCAGAAGAAGGCCGACGACGCCGGTATCGGCAACTCCCGCTAC
AACCTGCCGAGTGAGGTCGTCGCCCACCCGCATCTGACCGCCCGCGACCGCTGGCGGCCGGTCGAGACGCCCAACGGCGA
GATCTCCGCGCTGCTGCCGCCCCCGGTGATCGAGGGGTTCGAACAACCCATGGGAGCGGTGCCCGGACTCGGTCAGCACA
CCGACGAGATACTGGGCGGGCTGGGCCTGTCCGCCGACGAGATCGCCGCGCTGCGTGAGCAGGGCGCGGTCGGTCCGGCA
CAGTCATAG

Upstream 100 bases:

>100_bases
GACCGGAGGAGGTTGCCGGGGCCTTCGTGTTCATGGCGTCCGACGCCGCGTCCTACATCACCGGTCAGGTGCTTCCGGTG
GATGGTGGCATGGTGATGTG

Downstream 100 bases:

>100_bases
CCGCCACGCGTACGAACCAGGAGCACCCCATGCGCGAAACCGTCATCGTCGAAGCCGTCCGCACGCCGGTGGGCAAGCGC
AACGGCGGCCTGTCCGGCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MQTLPPLAGITVVTLEQAVSAPMCTRVLADFGARVIKIENPKGGDFARHYDDVVHGQAAHFVWANRGKESLSLDLKSPAG
MDILHRLLDGADVLVSNLAPGATARMGIGAADLKHRHPRVIPVEIDGYGAGGPISHKRAYDLLIQAESGACAVTGYPGMP
AKPGPPVADISTGLYAALSILALLYARKGDGAEPAPAVAVSLFDTMTDIMGYQLTYTQHSGVDQQPLGMSSPAVAPYGAF
PTRDGQTVVLGTTNDREWQRLAREIIERRDLADDPMFASNSDRCAHRDILNEAIGSWCAQHDLAHIQKKADDAGIGNSRY
NLPSEVVAHPHLTARDRWRPVETPNGEISALLPPPVIEGFEQPMGAVPGLGQHTDEILGGLGLSADEIAALREQGAVGPA
QS

Sequences:

>Translated_402_residues
MQTLPPLAGITVVTLEQAVSAPMCTRVLADFGARVIKIENPKGGDFARHYDDVVHGQAAHFVWANRGKESLSLDLKSPAG
MDILHRLLDGADVLVSNLAPGATARMGIGAADLKHRHPRVIPVEIDGYGAGGPISHKRAYDLLIQAESGACAVTGYPGMP
AKPGPPVADISTGLYAALSILALLYARKGDGAEPAPAVAVSLFDTMTDIMGYQLTYTQHSGVDQQPLGMSSPAVAPYGAF
PTRDGQTVVLGTTNDREWQRLAREIIERRDLADDPMFASNSDRCAHRDILNEAIGSWCAQHDLAHIQKKADDAGIGNSRY
NLPSEVVAHPHLTARDRWRPVETPNGEISALLPPPVIEGFEQPMGAVPGLGQHTDEILGGLGLSADEIAALREQGAVGPA
QS
>Mature_402_residues
MQTLPPLAGITVVTLEQAVSAPMCTRVLADFGARVIKIENPKGGDFARHYDDVVHGQAAHFVWANRGKESLSLDLKSPAG
MDILHRLLDGADVLVSNLAPGATARMGIGAADLKHRHPRVIPVEIDGYGAGGPISHKRAYDLLIQAESGACAVTGYPGMP
AKPGPPVADISTGLYAALSILALLYARKGDGAEPAPAVAVSLFDTMTDIMGYQLTYTQHSGVDQQPLGMSSPAVAPYGAF
PTRDGQTVVLGTTNDREWQRLAREIIERRDLADDPMFASNSDRCAHRDILNEAIGSWCAQHDLAHIQKKADDAGIGNSRY
NLPSEVVAHPHLTARDRWRPVETPNGEISALLPPPVIEGFEQPMGAVPGLGQHTDEILGGLGLSADEIAALREQGAVGPA
QS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=384, Percent_Identity=28.6458333333333, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI300863124, Length=292, Percent_Identity=30.4794520547945, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=26.8929503916449, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266456254, Length=397, Percent_Identity=27.7078085642317, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42794625, Length=397, Percent_Identity=27.7078085642317, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI13376042, Length=292, Percent_Identity=26.027397260274, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=29.4339622641509, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=29.5019157088123, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=35.6643356643357, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=35.6643356643357, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=290, Percent_Identity=33.448275862069, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1788717, Length=424, Percent_Identity=28.0660377358491, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=23.8442822384428, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=281, Percent_Identity=29.8932384341637, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=275, Percent_Identity=25.8181818181818, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=34.0852130325814, Blast_Score=191, Evalue=6e-49,
Organism=Drosophila melanogaster, GI24585488, Length=412, Percent_Identity=27.6699029126214, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42631; Mature: 42631

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLPPLAGITVVTLEQAVSAPMCTRVLADFGARVIKIENPKGGDFARHYDDVVHGQAAH
CCCCCCCCCCHHEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHE
FVWANRGKESLSLDLKSPAGMDILHRLLDGADVLVSNLAPGATARMGIGAADLKHRHPRV
EEEECCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHCCCCHHHHHCCCCCE
IPVEIDGYGAGGPISHKRAYDLLIQAESGACAVTGYPGMPAKPGPPVADISTGLYAALSI
EEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LALLYARKGDGAEPAPAVAVSLFDTMTDIMGYQLTYTQHSGVDQQPLGMSSPAVAPYGAF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
PTRDGQTVVLGTTNDREWQRLAREIIERRDLADDPMFASNSDRCAHRDILNEAIGSWCAQ
CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HDLAHIQKKADDAGIGNSRYNLPSEVVAHPHLTARDRWRPVETPNGEISALLPPPVIEGF
HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCEEEECCCHHHHHH
EQPMGAVPGLGQHTDEILGGLGLSADEIAALREQGAVGPAQS
HHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQTLPPLAGITVVTLEQAVSAPMCTRVLADFGARVIKIENPKGGDFARHYDDVVHGQAAH
CCCCCCCCCCHHEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHE
FVWANRGKESLSLDLKSPAGMDILHRLLDGADVLVSNLAPGATARMGIGAADLKHRHPRV
EEEECCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHCCCCHHHHHCCCCCE
IPVEIDGYGAGGPISHKRAYDLLIQAESGACAVTGYPGMPAKPGPPVADISTGLYAALSI
EEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LALLYARKGDGAEPAPAVAVSLFDTMTDIMGYQLTYTQHSGVDQQPLGMSSPAVAPYGAF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
PTRDGQTVVLGTTNDREWQRLAREIIERRDLADDPMFASNSDRCAHRDILNEAIGSWCAQ
CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HDLAHIQKKADDAGIGNSRYNLPSEVVAHPHLTARDRWRPVETPNGEISALLPPPVIEGF
HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCEEEECCCHHHHHH
EQPMGAVPGLGQHTDEILGGLGLSADEIAALREQGAVGPAQS
HHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]