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The map label for this gene is yhgF [C]

Identifier: 108800368

GI number: 108800368

Start: 3606182

End: 3608515

Strand: Reverse

Name: yhgF [C]

Synonym: Mmcs_3402

Alternate gene names: 108800368

Gene position: 3608515-3606182 (Counterclockwise)

Preceding gene: 108800369

Following gene: 108800366

Centisome position: 63.25

GC content: 70.44

Gene sequence:

>2334_bases
GTGACTTCGAGCCTGACCGTCAGATCCGTAAATGCCCGTCTCGCTGAGGAACTCGCCGTCGGTGAGGGGCAGGTCGCGGC
CGCCGTCCGGTTGCTCGACGAAGGCGCCACCGTGCCGTTCATCGCCCGCTACCGCAAGGAGGTCACCGGCAGCCTCGACG
ACGCGCAACTGCGCACGCTCGAAGAACGCCTGAACTACCTGCGGGAACTCGACGAGCGGCGGGCGGCGGTGCTGGCCTCC
ATCGAGGAGCAGGGCAAACTCACCGACGACCTCAGAACCGCGCTGCTGACCGCCGACACCAAGTCGCGGGTCGAGGACAT
CTACCTGCCGTACAAGCCGAAGCGGCGCACGAAGGCGCAGATCGCCAGGGAGGCGGGCCTCGAACCGCTCGCCGACCGCC
TGCTCGCCGATCCGACGCTGGTCCCCGAGGATGCAGCGGCTCGGTTCCTCGCCGACGGTGTGCCCGACGCTGCCGCCGCA
CTCGACGGGGCGCGCCACATCCTGATCGAGCGTGCGGCCGAGGACGCCGATCTGGTCGGCGCCGTACGCGAGAAGTTCTG
GACCGACGGGGCGCTGCGCACCTCACCCCGCTCCGACGAGGTCGCCAAGACCCCGGCGGCCCAGAAGTTCCGCGACTACT
TCGAATTCTCCGAACCCCTGCAGAACATGCCGTCGCACCGCGTGCTCGCGGTGATGCGCGGCGAGAAGGAAGAGGTGCTG
TCGCTGAACTTCGACGGGGGAGACGACGACCTCTACCTCGCGATGGTGGCCCAGACCCTGGGCATCGACATGGCGTCGAC
GGCCCCGGCGACACCGTGGCTGGCGACCACCGTCCGGTTGGCGTGGCGGGTCAAGCTGATGGTCTCGGCGGCCGTCGCCG
CACGTGTCCGCCTGCGGCAACGCGCGGAAGAGGATGCGGTCGCGGTGTTCGCCCGCAACCTCAAGGACCTGCTGCTCGCC
GCCCCCGCGGGTTCCCGGACCACCCTGGGCCTCGACCCGGGCTTCCGCACGGGTGTCAAGGTGGCCGTCGTCGACGGCAC
CGGCAAGGTCGTCGACACCTGCGCGATCTTCCCGCATCAGCCGCAGAAGCAGTGGGATCAGGCCAAGGCCACGCTCGCGG
CGCTCGTCGCCCGCCACGGGGTCGAGTTGATCGCCGTCGGCAACGGCACCGCATCGCGCGAAACCGACGCGCTGGCAGCC
GAACTCATCGCCGACATCGCGGCGGCGGGGGCCAAGGCGCCGGTGAAGGCGATGGTCAGCGAGGCCGGGGCGTCGGTGTA
CTCCGCCTCGGCGTACGCCGCGCACGAACTGCCCGCGCTGGACGTGACGTTGCGGGGTGCGGTGTCCATCGCACGCCGGT
TGCAGGATCCGCTCGCCGAACTGGTCAAGATCGAGCCGAAGTCGATCGGGGTGGGCCAGTACCAGCACGACGTGACGCCG
GGGACCCTGGCGCGCAGCCTCGACGCCGTGGTCGAGGACGCCGTCAACGCCGTCGGCGTCGACCTGAACACCGCGTCGGT
GCCGCTGCTGTCCCGGGTGTCGGGTGTCACCGACACGCTCGCCGAGGCCATCGTCGCCCACCGTGAGAAGACCGGGCCGT
TCCGCAACCGCACAGCACTGCTGGACGTCCCGCGCTTGGGGCCCAAGGCTTTCGAACAGTGCGCGGGCTTCCTCCGGATC
ACCGGCGGGGACGATCCGCTGGACGCCTCCGGTGTGCACCCCGAGGCCTACCCGGTGGTGCGGCGCATCCTCGACCGGTC
GGGGGTCACCCTGACCGAGATCATCGGCAACGAACGGCAGCTGCGCTCGCTCAAACCCGCCGACTTCGCCGACGACCGGT
TCGGCATCCCGACCGTCAGCGACATCCTGGCCGAACTCGAGAAGCCCGGCCGTGACCCCCGGCCGGCGTTCTCGACGGCG
ACGTTCGCGGCCGGTGTCGAGAAGGTGGCCGATCTGAAGGTCGGCATGGTGCTCGAGGGGGTGGTGACCAACGTCGCCGC
GTTCGGGGCGTTCGTCGACGTCGGCGTGCACCAGGACGGGCTGGTCCACGTCTCCGCGATGGCCGACCGTTTCGTCTCCG
ATCCGCACGAGGTGGTGCGGTCCGGTCAGGTGGTGCGGGTCAAGGTCGTCGAGGTCGACGTGGACCGGCAGCGGATCGGG
CTGAGCCTGCGCCTGGGCGACACACCGCAGCGCGACAAGGCCAAACCGCGCCAGAACGCCGGCGCGCCGCGGCCACAGCA
GAAGCGAAACCCCAAGCGCGACAACGATCGTCGCGAGAAGGCACCGTCGGGGTCGATGGCGCAGGCGCTGCGCGACGCCG
GCTTCGGTCGGTAG

Upstream 100 bases:

>100_bases
TGGTCGACGGTGGTGGCCACACCACCACCCATCCCTGACCGAGCGCCGCGCCGGTCGACCGCTGCCGCGACTTGTCGGCC
GGCTTCGGTAGGGTCTCGGC

Downstream 100 bases:

>100_bases
GGGTTCAGCGGCGGATCAGTGAACCCGTCGTCGCCGGCCGTTGACGCACCCGCTGAGGCCACCAGAACCAGCGGCCCAGC
AGCGCCGCGATCGACGGCGT

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 776

Protein sequence:

>777_residues
MTSSLTVRSVNARLAEELAVGEGQVAAAVRLLDEGATVPFIARYRKEVTGSLDDAQLRTLEERLNYLRELDERRAAVLAS
IEEQGKLTDDLRTALLTADTKSRVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPTLVPEDAAARFLADGVPDAAAA
LDGARHILIERAAEDADLVGAVREKFWTDGALRTSPRSDEVAKTPAAQKFRDYFEFSEPLQNMPSHRVLAVMRGEKEEVL
SLNFDGGDDDLYLAMVAQTLGIDMASTAPATPWLATTVRLAWRVKLMVSAAVAARVRLRQRAEEDAVAVFARNLKDLLLA
APAGSRTTLGLDPGFRTGVKVAVVDGTGKVVDTCAIFPHQPQKQWDQAKATLAALVARHGVELIAVGNGTASRETDALAA
ELIADIAAAGAKAPVKAMVSEAGASVYSASAYAAHELPALDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
GTLARSLDAVVEDAVNAVGVDLNTASVPLLSRVSGVTDTLAEAIVAHREKTGPFRNRTALLDVPRLGPKAFEQCAGFLRI
TGGDDPLDASGVHPEAYPVVRRILDRSGVTLTEIIGNERQLRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFSTA
TFAAGVEKVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSGQVVRVKVVEVDVDRQRIG
LSLRLGDTPQRDKAKPRQNAGAPRPQQKRNPKRDNDRREKAPSGSMAQALRDAGFGR

Sequences:

>Translated_777_residues
MTSSLTVRSVNARLAEELAVGEGQVAAAVRLLDEGATVPFIARYRKEVTGSLDDAQLRTLEERLNYLRELDERRAAVLAS
IEEQGKLTDDLRTALLTADTKSRVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPTLVPEDAAARFLADGVPDAAAA
LDGARHILIERAAEDADLVGAVREKFWTDGALRTSPRSDEVAKTPAAQKFRDYFEFSEPLQNMPSHRVLAVMRGEKEEVL
SLNFDGGDDDLYLAMVAQTLGIDMASTAPATPWLATTVRLAWRVKLMVSAAVAARVRLRQRAEEDAVAVFARNLKDLLLA
APAGSRTTLGLDPGFRTGVKVAVVDGTGKVVDTCAIFPHQPQKQWDQAKATLAALVARHGVELIAVGNGTASRETDALAA
ELIADIAAAGAKAPVKAMVSEAGASVYSASAYAAHELPALDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
GTLARSLDAVVEDAVNAVGVDLNTASVPLLSRVSGVTDTLAEAIVAHREKTGPFRNRTALLDVPRLGPKAFEQCAGFLRI
TGGDDPLDASGVHPEAYPVVRRILDRSGVTLTEIIGNERQLRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFSTA
TFAAGVEKVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSGQVVRVKVVEVDVDRQRIG
LSLRLGDTPQRDKAKPRQNAGAPRPQQKRNPKRDNDRREKAPSGSMAQALRDAGFGR
>Mature_776_residues
TSSLTVRSVNARLAEELAVGEGQVAAAVRLLDEGATVPFIARYRKEVTGSLDDAQLRTLEERLNYLRELDERRAAVLASI
EEQGKLTDDLRTALLTADTKSRVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPTLVPEDAAARFLADGVPDAAAAL
DGARHILIERAAEDADLVGAVREKFWTDGALRTSPRSDEVAKTPAAQKFRDYFEFSEPLQNMPSHRVLAVMRGEKEEVLS
LNFDGGDDDLYLAMVAQTLGIDMASTAPATPWLATTVRLAWRVKLMVSAAVAARVRLRQRAEEDAVAVFARNLKDLLLAA
PAGSRTTLGLDPGFRTGVKVAVVDGTGKVVDTCAIFPHQPQKQWDQAKATLAALVARHGVELIAVGNGTASRETDALAAE
LIADIAAAGAKAPVKAMVSEAGASVYSASAYAAHELPALDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTPG
TLARSLDAVVEDAVNAVGVDLNTASVPLLSRVSGVTDTLAEAIVAHREKTGPFRNRTALLDVPRLGPKAFEQCAGFLRIT
GGDDPLDASGVHPEAYPVVRRILDRSGVTLTEIIGNERQLRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFSTAT
FAAGVEKVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSGQVVRVKVVEVDVDRQRIGL
SLRLGDTPQRDKAKPRQNAGAPRPQQKRNPKRDNDRREKAPSGSMAQALRDAGFGR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=778, Percent_Identity=33.547557840617, Blast_Score=381, Evalue=1e-105,
Organism=Homo sapiens, GI27597090, Length=782, Percent_Identity=22.7621483375959, Blast_Score=103, Evalue=6e-22,
Organism=Escherichia coli, GI87082262, Length=761, Percent_Identity=58.4756898817346, Blast_Score=836, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=80, Percent_Identity=42.5, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=717, Percent_Identity=27.6150627615063, Blast_Score=221, Evalue=9e-58,
Organism=Caenorhabditis elegans, GI17552892, Length=263, Percent_Identity=30.4182509505703, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=769, Percent_Identity=32.1196358907672, Blast_Score=366, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83403; Mature: 83271

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSLTVRSVNARLAEELAVGEGQVAAAVRLLDEGATVPFIARYRKEVTGSLDDAQLRTL
CCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
EERLNYLRELDERRAAVLASIEEQGKLTDDLRTALLTADTKSRVEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHH
IAREAGLEPLADRLLADPTLVPEDAAARFLADGVPDAAAALDGARHILIERAAEDADLVG
HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCHHHHH
AVREKFWTDGALRTSPRSDEVAKTPAAQKFRDYFEFSEPLQNMPSHRVLAVMRGEKEEVL
HHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEE
SLNFDGGDDDLYLAMVAQTLGIDMASTAPATPWLATTVRLAWRVKLMVSAAVAARVRLRQ
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAEEDAVAVFARNLKDLLLAAPAGSRTTLGLDPGFRTGVKVAVVDGTGKVVDTCAIFPHQ
HHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCEEEEECCCCCEEHHEECCCCC
PQKQWDQAKATLAALVARHGVELIAVGNGTASRETDALAAELIADIAAAGAKAPVKAMVS
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
EAGASVYSASAYAAHELPALDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
HHCCHHHHCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
GTLARSLDAVVEDAVNAVGVDLNTASVPLLSRVSGVTDTLAEAIVAHREKTGPFRNRTAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
LDVPRLGPKAFEQCAGFLRITGGDDPLDASGVHPEAYPVVRRILDRSGVTLTEIIGNERQ
EECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCHHH
LRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFSTATFAAGVEKVADLKVGMVLEG
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSGQVVRVKVVEVDVDRQRIG
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEEECCHHHHC
LSLRLGDTPQRDKAKPRQNAGAPRPQQKRNPKRDNDRREKAPSGSMAQALRDAGFGR
EEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TSSLTVRSVNARLAEELAVGEGQVAAAVRLLDEGATVPFIARYRKEVTGSLDDAQLRTL
CCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
EERLNYLRELDERRAAVLASIEEQGKLTDDLRTALLTADTKSRVEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHH
IAREAGLEPLADRLLADPTLVPEDAAARFLADGVPDAAAALDGARHILIERAAEDADLVG
HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCHHHHH
AVREKFWTDGALRTSPRSDEVAKTPAAQKFRDYFEFSEPLQNMPSHRVLAVMRGEKEEVL
HHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEE
SLNFDGGDDDLYLAMVAQTLGIDMASTAPATPWLATTVRLAWRVKLMVSAAVAARVRLRQ
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAEEDAVAVFARNLKDLLLAAPAGSRTTLGLDPGFRTGVKVAVVDGTGKVVDTCAIFPHQ
HHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCEEEEECCCCCEEHHEECCCCC
PQKQWDQAKATLAALVARHGVELIAVGNGTASRETDALAAELIADIAAAGAKAPVKAMVS
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
EAGASVYSASAYAAHELPALDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
HHCCHHHHCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
GTLARSLDAVVEDAVNAVGVDLNTASVPLLSRVSGVTDTLAEAIVAHREKTGPFRNRTAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
LDVPRLGPKAFEQCAGFLRITGGDDPLDASGVHPEAYPVVRRILDRSGVTLTEIIGNERQ
EECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCHHH
LRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFSTATFAAGVEKVADLKVGMVLEG
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSGQVVRVKVVEVDVDRQRIG
HHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEEECCHHHHC
LSLRLGDTPQRDKAKPRQNAGAPRPQQKRNPKRDNDRREKAPSGSMAQALRDAGFGR
EEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]