| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is alkK [H]
Identifier: 108800152
GI number: 108800152
Start: 3377262
End: 3378893
Strand: Reverse
Name: alkK [H]
Synonym: Mmcs_3186
Alternate gene names: 108800152
Gene position: 3378893-3377262 (Counterclockwise)
Preceding gene: 108800153
Following gene: 108800151
Centisome position: 59.22
GC content: 60.48
Gene sequence:
>1632_bases ATGCAAAGCACAATGCAAAATGTTCCGCTCACGGTGTCGGCGATCGTCCAGCATGCGGCAGCCATACACGGTGACAGCGA GGTCGTCACTCCGACCGGAAATGGATATCGGAGAACGCCTTACCGCATTGTGCTGGCGCGAGTGGCTCGCCTTGCCAATG CGCTGCGCAGTCTTGGCGTCACGGCAGACCAACGCGTGGCCACCTTCCAGTGGAGCAACCAGGAACATCTGGAGGCCTAC TGTGCGATTCCCTCCATGGGCGCGGTCCTGCACACGCTCAACATTCGTTTGGCCCCAGAGCAACTGGCGTACATCGCCAA TCACGCGAGCGATCAGATCGTCCTAGTCGACGCTTCGGTTGCCCCGTTGTTGGCGCGCGCGCTCCCAGCGATGGCGTCGG TGCACACCGTCATCGTCACCGGAGAGGGCGACCTTGCCCCGCTCCAGGGATGCGGGAAGACCGTTCTGCGTTACGAGGAA GTGCTTGCCGGCCAAGAAGAATCATTTGACTGGCCTGAGCTCGACGAGCTGTCCGCCGCGGCCATGTGTTATACGAGCGG TACCACCGGAGATCCCAAAGGCGTCGTCTACAGCCACCGTTCGACGTACCTTCACTCCCTGACCGCCTGCACAGCTAACG CTTTGTCAGTCAGCGAGGCCGACCGTGTGCTGGCCATCGTCCCAATGTTTCACGCCAATGCGTGGGGGCTTATTTACGCA GCGTTGATGTCCGGTGCGGATCTGGTACTGCCTGACCGGTATCTCCAAGCCGAACCGTTGGTGTCGATCATCGAAGACAC CAGACCGACCTTGGCCGGTGCAGTGCCGACGATCTGGAACGATGTCGACCGATATCTGGATTCGCACCCTGAGCGGGACA TTTCTTCGTTACGGCTGGTCGCGTGCGGGGGGTCTGCTGTTCCGCTTTCGTTGATGCGGGCATTCGAAGAGAAGTACGAC GTGCCCATTGTGCAGGCCTGGGGTATGACCGAAACCTCTCCGTTGGCGACCGTTGCACGTCCGGCTCACAGAGCCGACGC GACGCGGCGCTGGGAGCTGCGCGCATCCCAGGGCCGACCGATCTGCGGTGTCGAAATCCGGTTGCGGGACGACGACGGGA AAGACGTGCCGTGGGACGGGCAATCAGTTGGGGAGATCCAGGCGCGCGGTCCCTGGATCACCGGGTCCTATTTCGGAAAC AACGATACGGAGAAGTTCGACGAAGGATGGCTGCGTACCGGTGATGTGGGCAAGATCGACGCCGAGGGCTATCTGACACT GACCGACCGCTCGAAAGACGTCATCAAGTCAGGTGGCGAATGGATCTCCTCGGTGGAGCTGGAAAACACGCTGATCGGCC ACCCTGCCGTGTACGAAGCGGCGGTAGTCGGCGTCGCGGACGATAAATGGCAGGAAAGGCCGTTGGCGCTTGTCGTCGTC CACCCCGGAACCGACGTTGACATTGACCAACTCCGATCGTTCCTTGCGGACAAAGTCGCCAAATGGTGGATTCCCGAGCG ATGGAGCTTCGTGTCCGATATTCCGAGGACGAGCGTCGGAAAGTACGACAAAAAGGTCATCCGTGCGCGCCACTCTGCCG GCGAATACCTCATCGAAATCGAAACGTCATAA
Upstream 100 bases:
>100_bases CCCTAGCAGACATCCTGCAAGCACTGAGAACGCATTACGGCACATTCATCGATCAGCCGAACAGCCGTCCCGACCTCTTC GCCTGAAAGGGCACTACACG
Downstream 100 bases:
>100_bases CGTCAAATCCCTGGAATTCCAACAGTCGGAAGGTAATCATGTCCTCACCAATCTCTCCCTGGATGAATGCCGAATTACTC GAGCTTCGTGACCTCGCTGC
Product: long-chain-fatty-acid--CoA ligase
Products: NA
Alternate protein names: Medium-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MQSTMQNVPLTVSAIVQHAAAIHGDSEVVTPTGNGYRRTPYRIVLARVARLANALRSLGVTADQRVATFQWSNQEHLEAY CAIPSMGAVLHTLNIRLAPEQLAYIANHASDQIVLVDASVAPLLARALPAMASVHTVIVTGEGDLAPLQGCGKTVLRYEE VLAGQEESFDWPELDELSAAAMCYTSGTTGDPKGVVYSHRSTYLHSLTACTANALSVSEADRVLAIVPMFHANAWGLIYA ALMSGADLVLPDRYLQAEPLVSIIEDTRPTLAGAVPTIWNDVDRYLDSHPERDISSLRLVACGGSAVPLSLMRAFEEKYD VPIVQAWGMTETSPLATVARPAHRADATRRWELRASQGRPICGVEIRLRDDDGKDVPWDGQSVGEIQARGPWITGSYFGN NDTEKFDEGWLRTGDVGKIDAEGYLTLTDRSKDVIKSGGEWISSVELENTLIGHPAVYEAAVVGVADDKWQERPLALVVV HPGTDVDIDQLRSFLADKVAKWWIPERWSFVSDIPRTSVGKYDKKVIRARHSAGEYLIEIETS
Sequences:
>Translated_543_residues MQSTMQNVPLTVSAIVQHAAAIHGDSEVVTPTGNGYRRTPYRIVLARVARLANALRSLGVTADQRVATFQWSNQEHLEAY CAIPSMGAVLHTLNIRLAPEQLAYIANHASDQIVLVDASVAPLLARALPAMASVHTVIVTGEGDLAPLQGCGKTVLRYEE VLAGQEESFDWPELDELSAAAMCYTSGTTGDPKGVVYSHRSTYLHSLTACTANALSVSEADRVLAIVPMFHANAWGLIYA ALMSGADLVLPDRYLQAEPLVSIIEDTRPTLAGAVPTIWNDVDRYLDSHPERDISSLRLVACGGSAVPLSLMRAFEEKYD VPIVQAWGMTETSPLATVARPAHRADATRRWELRASQGRPICGVEIRLRDDDGKDVPWDGQSVGEIQARGPWITGSYFGN NDTEKFDEGWLRTGDVGKIDAEGYLTLTDRSKDVIKSGGEWISSVELENTLIGHPAVYEAAVVGVADDKWQERPLALVVV HPGTDVDIDQLRSFLADKVAKWWIPERWSFVSDIPRTSVGKYDKKVIRARHSAGEYLIEIETS >Mature_543_residues MQSTMQNVPLTVSAIVQHAAAIHGDSEVVTPTGNGYRRTPYRIVLARVARLANALRSLGVTADQRVATFQWSNQEHLEAY CAIPSMGAVLHTLNIRLAPEQLAYIANHASDQIVLVDASVAPLLARALPAMASVHTVIVTGEGDLAPLQGCGKTVLRYEE VLAGQEESFDWPELDELSAAAMCYTSGTTGDPKGVVYSHRSTYLHSLTACTANALSVSEADRVLAIVPMFHANAWGLIYA ALMSGADLVLPDRYLQAEPLVSIIEDTRPTLAGAVPTIWNDVDRYLDSHPERDISSLRLVACGGSAVPLSLMRAFEEKYD VPIVQAWGMTETSPLATVARPAHRADATRRWELRASQGRPICGVEIRLRDDDGKDVPWDGQSVGEIQARGPWITGSYFGN NDTEKFDEGWLRTGDVGKIDAEGYLTLTDRSKDVIKSGGEWISSVELENTLIGHPAVYEAAVVGVADDKWQERPLALVVV HPGTDVDIDQLRSFLADKVAKWWIPERWSFVSDIPRTSVGKYDKKVIRARHSAGEYLIEIETS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI187761345, Length=398, Percent_Identity=27.1356783919598, Blast_Score=135, Evalue=7e-32, Organism=Homo sapiens, GI187761343, Length=398, Percent_Identity=27.1356783919598, Blast_Score=135, Evalue=7e-32, Organism=Homo sapiens, GI156151445, Length=354, Percent_Identity=29.3785310734463, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI28416953, Length=521, Percent_Identity=25.9117082533589, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI38505220, Length=367, Percent_Identity=25.8855585831063, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI42794754, Length=501, Percent_Identity=22.3552894211577, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI42794752, Length=501, Percent_Identity=22.3552894211577, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI42544132, Length=462, Percent_Identity=20.995670995671, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI122937307, Length=470, Percent_Identity=22.5531914893617, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI115511026, Length=376, Percent_Identity=25.2659574468085, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI13375727, Length=574, Percent_Identity=21.7770034843206, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI58082049, Length=405, Percent_Identity=24.6913580246914, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI157311624, Length=404, Percent_Identity=23.5148514851485, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI157311622, Length=404, Percent_Identity=23.5148514851485, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI8923896, Length=552, Percent_Identity=23.0072463768116, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI145693145, Length=361, Percent_Identity=32.6869806094183, Blast_Score=169, Evalue=6e-43, Organism=Escherichia coli, GI221142682, Length=518, Percent_Identity=27.2200772200772, Blast_Score=149, Evalue=4e-37, Organism=Escherichia coli, GI1788107, Length=499, Percent_Identity=26.25250501002, Blast_Score=128, Evalue=9e-31, Organism=Escherichia coli, GI1786810, Length=359, Percent_Identity=29.8050139275766, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1788595, Length=473, Percent_Identity=26.6384778012685, Blast_Score=106, Evalue=4e-24, Organism=Escherichia coli, GI1789201, Length=361, Percent_Identity=24.0997229916898, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1790505, Length=530, Percent_Identity=23.9622641509434, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1786529, Length=539, Percent_Identity=23.747680890538, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558820, Length=511, Percent_Identity=26.614481409002, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17559526, Length=372, Percent_Identity=27.4193548387097, Blast_Score=134, Evalue=9e-32, Organism=Caenorhabditis elegans, GI17531443, Length=446, Percent_Identity=27.3542600896861, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17557194, Length=548, Percent_Identity=24.6350364963504, Blast_Score=125, Evalue=7e-29, Organism=Caenorhabditis elegans, GI32563687, Length=360, Percent_Identity=27.7777777777778, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17560140, Length=448, Percent_Identity=23.2142857142857, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17538037, Length=531, Percent_Identity=24.105461393597, Blast_Score=116, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71994703, Length=551, Percent_Identity=23.7749546279492, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17560308, Length=569, Percent_Identity=23.5500878734622, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994694, Length=551, Percent_Identity=23.7749546279492, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994690, Length=555, Percent_Identity=23.6036036036036, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71985884, Length=362, Percent_Identity=28.4530386740331, Blast_Score=102, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71996755, Length=383, Percent_Identity=26.3707571801567, Blast_Score=99, Evalue=6e-21, Organism=Caenorhabditis elegans, GI115534440, Length=520, Percent_Identity=21.9230769230769, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17556552, Length=438, Percent_Identity=24.8858447488584, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71983001, Length=409, Percent_Identity=24.2053789731051, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71982997, Length=409, Percent_Identity=24.2053789731051, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=355, Percent_Identity=29.5774647887324, Blast_Score=150, Evalue=6e-37, Organism=Saccharomyces cerevisiae, GI6319264, Length=543, Percent_Identity=23.9410681399632, Blast_Score=79, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323182, Length=546, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6320852, Length=556, Percent_Identity=22.841726618705, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581924, Length=564, Percent_Identity=26.063829787234, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI18859661, Length=395, Percent_Identity=26.3291139240506, Blast_Score=129, Evalue=6e-30, Organism=Drosophila melanogaster, GI21355181, Length=526, Percent_Identity=24.3346007604563, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI17933690, Length=558, Percent_Identity=22.9390681003584, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24648260, Length=368, Percent_Identity=26.0869565217391, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI24648255, Length=504, Percent_Identity=24.6031746031746, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24653035, Length=357, Percent_Identity=23.8095238095238, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24648253, Length=504, Percent_Identity=24.6031746031746, Blast_Score=92, Evalue=9e-19, Organism=Drosophila melanogaster, GI21356947, Length=489, Percent_Identity=23.5173824130879, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI19922652, Length=369, Percent_Identity=24.6612466124661, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI24656500, Length=512, Percent_Identity=23.6328125, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI62472339, Length=560, Percent_Identity=22.8571428571429, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24667955, Length=560, Percent_Identity=22.8571428571429, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI21355225, Length=560, Percent_Identity=22.8571428571429, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI161076582, Length=335, Percent_Identity=24.1791044776119, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI281365686, Length=211, Percent_Identity=28.436018957346, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI221329755, Length=386, Percent_Identity=22.279792746114, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI20130357, Length=499, Percent_Identity=21.6432865731463, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI24667959, Length=401, Percent_Identity=23.1920199501247, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648257, Length=502, Percent_Identity=22.5099601593625, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI21356441, Length=497, Percent_Identity=22.1327967806841, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24648676, Length=404, Percent_Identity=25, Blast_Score=73, Evalue=6e-13, Organism=Drosophila melanogaster, GI21358303, Length=340, Percent_Identity=22.9411764705882, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: NA
Molecular weight: Translated: 59347; Mature: 59347
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSTMQNVPLTVSAIVQHAAAIHGDSEVVTPTGNGYRRTPYRIVLARVARLANALRSLGV CCCCHHCCCEEHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC TADQRVATFQWSNQEHLEAYCAIPSMGAVLHTLNIRLAPEQLAYIANHASDQIVLVDASV CCCCEEEEEECCCHHHHHHEECCCCHHHEEEHEEEEECHHHHHHHHHCCCCEEEEEECCH APLLARALPAMASVHTVIVTGEGDLAPLQGCGKTVLRYEEVLAGQEESFDWPELDELSAA HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH AMCYTSGTTGDPKGVVYSHRSTYLHSLTACTANALSVSEADRVLAIVPMFHANAWGLIYA EEEEECCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHH ALMSGADLVLPDRYLQAEPLVSIIEDTRPTLAGAVPTIWNDVDRYLDSHPERDISSLRLV HHHCCCCEECCCCHHCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEE ACGGSAVPLSLMRAFEEKYDVPIVQAWGMTETSPLATVARPAHRADATRRWELRASQGRP EECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCHHHCCCCEEEEEECCCCCC ICGVEIRLRDDDGKDVPWDGQSVGEIQARGPWITGSYFGNNDTEKFDEGWLRTGDVGKID EEEEEEEEECCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCHHHCCCCCCCCCCEEC AEGYLTLTDRSKDVIKSGGEWISSVELENTLIGHPAVYEAAVVGVADDKWQERPLALVVV CCCEEEEECCCHHHHHCCCHHHHHEEHHHEECCCCHHHHEEEEECCCCCCCCCCEEEEEE HPGTDVDIDQLRSFLADKVAKWWIPERWSFVSDIPRTSVGKYDKKVIRARHSAGEYLIEI CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE ETS ECC >Mature Secondary Structure MQSTMQNVPLTVSAIVQHAAAIHGDSEVVTPTGNGYRRTPYRIVLARVARLANALRSLGV CCCCHHCCCEEHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC TADQRVATFQWSNQEHLEAYCAIPSMGAVLHTLNIRLAPEQLAYIANHASDQIVLVDASV CCCCEEEEEECCCHHHHHHEECCCCHHHEEEHEEEEECHHHHHHHHHCCCCEEEEEECCH APLLARALPAMASVHTVIVTGEGDLAPLQGCGKTVLRYEEVLAGQEESFDWPELDELSAA HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH AMCYTSGTTGDPKGVVYSHRSTYLHSLTACTANALSVSEADRVLAIVPMFHANAWGLIYA EEEEECCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHH ALMSGADLVLPDRYLQAEPLVSIIEDTRPTLAGAVPTIWNDVDRYLDSHPERDISSLRLV HHHCCCCEECCCCHHCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEE ACGGSAVPLSLMRAFEEKYDVPIVQAWGMTETSPLATVARPAHRADATRRWELRASQGRP EECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCHHHCCCCEEEEEECCCCCC ICGVEIRLRDDDGKDVPWDGQSVGEIQARGPWITGSYFGNNDTEKFDEGWLRTGDVGKID EEEEEEEEECCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCHHHCCCCCCCCCCEEC AEGYLTLTDRSKDVIKSGGEWISSVELENTLIGHPAVYEAAVVGVADDKWQERPLALVVV CCCEEEEECCCHHHHHCCCHHHHHEEHHHEECCCCHHHHEEEEECCCCCCCCCCEEEEEE HPGTDVDIDQLRSFLADKVAKWWIPERWSFVSDIPRTSVGKYDKKVIRARHSAGEYLIEI CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE ETS ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1453953 [H]