| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
Click here to switch to the map view.
The map label for this gene is 108800117
Identifier: 108800117
GI number: 108800117
Start: 3343559
End: 3344998
Strand: Reverse
Name: 108800117
Synonym: Mmcs_3151
Alternate gene names: NA
Gene position: 3344998-3343559 (Counterclockwise)
Preceding gene: 108800118
Following gene: 108800115
Centisome position: 58.63
GC content: 67.15
Gene sequence:
>1440_bases ATGATCCGCAGGTTGATCGCGCTGGTCGCGGTGACGGCACTGGCCGGATGCGCCCAGAGTGGCGAAACCGACGAACCGGC GCCCGCCTCGTCGAGCGCCCCGCCGGCGGCGGTGAGCCCGGAAGAGGCGCGCGCGATCGCGAAAGAGGCCTACATCTACG GCTTCCCGATCGTCGACAACTACCGGGTGCAGTACGCCTACTACGTAAACAAGGACAATCCCGAGTACAAGGGCGGATGG AACGAGATCCACAGCACCGCAAGGGTTTACACCCCGGACGACAAGGCGGTGCAAACCCCGAACTCCGATACCCCGTATTC GATGCTCGGCGCCGACCTGCGCGCCGAACCGCTGGTGCTCACCGTTCCGCCGATCGAACAGGACCGCTACTACTCGCTGC AGTTCATCAACGGCTACACCAACAACATCGCCTACGTCGGCAGCCGGACCACCGGCAACGGCGGCGGGAAGTACCTACTG GCCGGGCCGGGGTGGCAGGGCGCCAAACCCGACGGCATCGACGAGGTGATCCGCTCCGACACCGACCTGGCCGGCGTGAT CTACCGCACCCAGTTGTTCGGACCGTCGGACCTGGAGAGCGTCAAGAAGATCCAGGCCGGTTACCAGGTCGCCCCGCTGT CGGTGTTCCTCAACGCGCCGCCGCCCCCGGGCGCCCCGCCCATCGACTTCGTCCCGCCGTTGACCCCTGACCAGCAGCGC ACCTCACCGCAGTTCTTCGAGATCCTCAACTTCGCGCTGCGCTACGCACCGGTGCTGCCCAGCGAGCGGGACATGCGTAA CCGGTTCGCGCGCATCGGCATCGGACCCGACGGCGATTTCGACGCCGACACCCTGACCCCGGAGGTGCGGTCGGCGGTCG AGGGCGGGATGGCCGACGCCTGGGCGGAGTTCGACGAGTTCAAGACCTCCGAGGTCGAGACCGGCAAGGTGGGGTCGGCC CAGTTCTTCGGCACCGCCGAGGACCTCAAGGGCAACTACCTCTACCGGATGGCCGGTGCGGTGTTCGGGATCTACGGCAA CACCGCCGCCGAAGCGCTCTACCCGGCGCTGGTCACCGACGCCGACGGCGCACCGCTGACCGGGGCGAACAACTACACCG TGCGCTTCGCGCCCGGCCAACTGCCGCCGGTGAACGCGTTCTGGTCGCTGACGATGTACGAGATGCCGGCCAGCCTGCTG GTGGCCAACCCGATGCAGCGCTACCTGATCAACTCGCCGATGCTGCCCAGCCTGGTCCCCGACCCCGACGGCGGCTACAC GTTCTACGTGCAGAACGCCTCACCGGGCATCGAGAAGGAGTCCAACTGGCTGCCGGCGCCCAAGGGCCCGTTCCAGATGA TCCTGCGGCTGTACTGGCCGAAGCCCGATGCCCTCAACGGGACGTGGAAGGCGCCACAGGTGGTGAAGGTCAACTCCTGA
Upstream 100 bases:
>100_bases CCTCGGTGCTCAAGACGGCGCCGAAGGTGTTGCCCCAGATGGACGCCGAGGTGACCGCACTGAAGCGCTCGCTGGGCGCC CGCACCCACGGGCTGAAGAA
Downstream 100 bases:
>100_bases AACCCGGCCCGCGCCGGCGCAGATAACGCTCGAACTCGGCGGCCAGTGCGTCGCCGTCGATCTTGCCGAGCACCTCGGTC ATGTCGACCTCGGCGTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MIRRLIALVAVTALAGCAQSGETDEPAPASSSAPPAAVSPEEARAIAKEAYIYGFPIVDNYRVQYAYYVNKDNPEYKGGW NEIHSTARVYTPDDKAVQTPNSDTPYSMLGADLRAEPLVLTVPPIEQDRYYSLQFINGYTNNIAYVGSRTTGNGGGKYLL AGPGWQGAKPDGIDEVIRSDTDLAGVIYRTQLFGPSDLESVKKIQAGYQVAPLSVFLNAPPPPGAPPIDFVPPLTPDQQR TSPQFFEILNFALRYAPVLPSERDMRNRFARIGIGPDGDFDADTLTPEVRSAVEGGMADAWAEFDEFKTSEVETGKVGSA QFFGTAEDLKGNYLYRMAGAVFGIYGNTAAEALYPALVTDADGAPLTGANNYTVRFAPGQLPPVNAFWSLTMYEMPASLL VANPMQRYLINSPMLPSLVPDPDGGYTFYVQNASPGIEKESNWLPAPKGPFQMILRLYWPKPDALNGTWKAPQVVKVNS
Sequences:
>Translated_479_residues MIRRLIALVAVTALAGCAQSGETDEPAPASSSAPPAAVSPEEARAIAKEAYIYGFPIVDNYRVQYAYYVNKDNPEYKGGW NEIHSTARVYTPDDKAVQTPNSDTPYSMLGADLRAEPLVLTVPPIEQDRYYSLQFINGYTNNIAYVGSRTTGNGGGKYLL AGPGWQGAKPDGIDEVIRSDTDLAGVIYRTQLFGPSDLESVKKIQAGYQVAPLSVFLNAPPPPGAPPIDFVPPLTPDQQR TSPQFFEILNFALRYAPVLPSERDMRNRFARIGIGPDGDFDADTLTPEVRSAVEGGMADAWAEFDEFKTSEVETGKVGSA QFFGTAEDLKGNYLYRMAGAVFGIYGNTAAEALYPALVTDADGAPLTGANNYTVRFAPGQLPPVNAFWSLTMYEMPASLL VANPMQRYLINSPMLPSLVPDPDGGYTFYVQNASPGIEKESNWLPAPKGPFQMILRLYWPKPDALNGTWKAPQVVKVNS >Mature_479_residues MIRRLIALVAVTALAGCAQSGETDEPAPASSSAPPAAVSPEEARAIAKEAYIYGFPIVDNYRVQYAYYVNKDNPEYKGGW NEIHSTARVYTPDDKAVQTPNSDTPYSMLGADLRAEPLVLTVPPIEQDRYYSLQFINGYTNNIAYVGSRTTGNGGGKYLL AGPGWQGAKPDGIDEVIRSDTDLAGVIYRTQLFGPSDLESVKKIQAGYQVAPLSVFLNAPPPPGAPPIDFVPPLTPDQQR TSPQFFEILNFALRYAPVLPSERDMRNRFARIGIGPDGDFDADTLTPEVRSAVEGGMADAWAEFDEFKTSEVETGKVGSA QFFGTAEDLKGNYLYRMAGAVFGIYGNTAAEALYPALVTDADGAPLTGANNYTVRFAPGQLPPVNAFWSLTMYEMPASLL VANPMQRYLINSPMLPSLVPDPDGGYTFYVQNASPGIEKESNWLPAPKGPFQMILRLYWPKPDALNGTWKAPQVVKVNS
Specific function: Unknown
COG id: COG5361
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52053; Mature: 52053
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRLIALVAVTALAGCAQSGETDEPAPASSSAPPAAVSPEEARAIAKEAYIYGFPIVDN CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCEEEC YRVQYAYYVNKDNPEYKGGWNEIHSTARVYTPDDKAVQTPNSDTPYSMLGADLRAEPLVL EEEEEEEEECCCCCCCCCCHHHHCCCEEEECCCCCCEECCCCCCCHHHHCCCCCCCCEEE TVPPIEQDRYYSLQFINGYTNNIAYVGSRTTGNGGGKYLLAGPGWQGAKPDGIDEVIRSD ECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCC TDLAGVIYRTQLFGPSDLESVKKIQAGYQVAPLSVFLNAPPPPGAPPIDFVPPLTPDQQR CCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC TSPQFFEILNFALRYAPVLPSERDMRNRFARIGIGPDGDFDADTLTPEVRSAVEGGMADA CCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCHHHH WAEFDEFKTSEVETGKVGSAQFFGTAEDLKGNYLYRMAGAVFGIYGNTAAEALYPALVTD HHHHHHHCCCCCCCCCCCCEEECCCHHHCCCCEEEEEHHHEEEECCCHHHHHHHHHHEEC ADGAPLTGANNYTVRFAPGQLPPVNAFWSLTMYEMPASLLVANPMQRYLINSPMLPSLVP CCCCCCCCCCCEEEEECCCCCCCCCHHEEEEHHHCCHHHHHHCHHHHHHCCCCCCCCCCC DPDGGYTFYVQNASPGIEKESNWLPAPKGPFQMILRLYWPKPDALNGTWKAPQVVKVNS CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MIRRLIALVAVTALAGCAQSGETDEPAPASSSAPPAAVSPEEARAIAKEAYIYGFPIVDN CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCEEEC YRVQYAYYVNKDNPEYKGGWNEIHSTARVYTPDDKAVQTPNSDTPYSMLGADLRAEPLVL EEEEEEEEECCCCCCCCCCHHHHCCCEEEECCCCCCEECCCCCCCHHHHCCCCCCCCEEE TVPPIEQDRYYSLQFINGYTNNIAYVGSRTTGNGGGKYLLAGPGWQGAKPDGIDEVIRSD ECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCC TDLAGVIYRTQLFGPSDLESVKKIQAGYQVAPLSVFLNAPPPPGAPPIDFVPPLTPDQQR CCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC TSPQFFEILNFALRYAPVLPSERDMRNRFARIGIGPDGDFDADTLTPEVRSAVEGGMADA CCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCHHHH WAEFDEFKTSEVETGKVGSAQFFGTAEDLKGNYLYRMAGAVFGIYGNTAAEALYPALVTD HHHHHHHCCCCCCCCCCCCEEECCCHHHCCCCEEEEEHHHEEEECCCHHHHHHHHHHEEC ADGAPLTGANNYTVRFAPGQLPPVNAFWSLTMYEMPASLLVANPMQRYLINSPMLPSLVP CCCCCCCCCCCEEEEECCCCCCCCCHHEEEEHHHCCHHHHHHCHHHHHHCCCCCCCCCCC DPDGGYTFYVQNASPGIEKESNWLPAPKGPFQMILRLYWPKPDALNGTWKAPQVVKVNS CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA