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The map label for this gene is rarD [H]

Identifier: 108800057

GI number: 108800057

Start: 3270141

End: 3271079

Strand: Reverse

Name: rarD [H]

Synonym: Mmcs_3091

Alternate gene names: 108800057

Gene position: 3271079-3270141 (Counterclockwise)

Preceding gene: 108800058

Following gene: 108800056

Centisome position: 57.33

GC content: 68.16

Gene sequence:

>939_bases
GTGACCGAGACGCGCCGCAACGGCCTGCTCTTCGGCATCGGCGCCTATGTCTGGTGGGGGCTGTGTCCGGGGTTCTTCCT
GCTGTTGCTGCCCGCCGGGTCCCTCGAGATCCTCGCGCACCGCATCGTGTGGAGTGTGGTGTTCCTGCTGCTGGTGCTCG
CGGTGGCCCGTCGCCTCGGCGATCTGCTCCGATTGTCCTGGCGCACCTGGCTGCAACTGCTCGCGGCGTCGGCGCTGGTG
TCGGCGAACTGGGGGGTCTACATCTACGCGGCCACCCACTCACACGTGGTGGACGCCGCCCTCGGGTATTTCATCAACCC
GCTGCTGAGCGTCGCGCTCGGGGTGCTGGTGTTCCGGGAACGGATCAACCGCTCGCAGCAGGTGGCGCTGGTGCTCGCCG
TCGCCGCGGTCGTCCTGCTCACCGTCGAAATCGGCGCCCCGCCCTACATCGCACTCGCCCTTGCGGTGTCTTTCGCGCTC
TACGGGCTGGTGAAGAAGGTGGTCACCGCCGACCCGCGGGTCAGCGTCGCGGTGGAGACGCTGATCGCGCTGCCGTTCGC
GGGCGGCTACGTGCTGGCGCTGGAACTCACCGACCGGGGGCATTTCCTCAGCGAAGGGCTCGCACACACCGGTCTGCTGC
TGCTGGCGGGCCCGGTCACGGCCATCCCGCTGCTGTTGTTCGGCGCGGCCGCGCAGCGGCTCCCGCTGGTGACGCTGGGT
CTGCTGTTCTACATCAATCCTGGTCTGCAGATGGCCTGGGGAGTGGTGATCGGGCATGAACCGATGCCGGTCGGACGGTG
GATCGGCTTCGCACTGATCTGGCTGGCGCTGGCCCTGCTGGCCGCCGATGCCGTGCGCCGTCGCACGCCGAGGGAGCGAA
CCTCCACGACACCGGCGGAACATGTCGATCGGGACGAATCGAAATCGTCATCACACTGA

Upstream 100 bases:

>100_bases
TGGCGTTCGCCCATCCGGCCGACGGTCGCCGGATCGAGATCACCAGCCCCTATCCGGCCGATCTGCAGCACGCCCTCGAC
GTCCTGCGCCGTCACGCGCG

Downstream 100 bases:

>100_bases
CGACCCGTCCACGACACCGGGAGGACACCGTGCAGTACTGCCTGATCATGCATTACCCCGAAGGCCCGGAGATCGGGTTG
ACCGAGGAGGACATGGCCCC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTETRRNGLLFGIGAYVWWGLCPGFFLLLLPAGSLEILAHRIVWSVVFLLLVLAVARRLGDLLRLSWRTWLQLLAASALV
SANWGVYIYAATHSHVVDAALGYFINPLLSVALGVLVFRERINRSQQVALVLAVAAVVLLTVEIGAPPYIALALAVSFAL
YGLVKKVVTADPRVSVAVETLIALPFAGGYVLALELTDRGHFLSEGLAHTGLLLLAGPVTAIPLLLFGAAAQRLPLVTLG
LLFYINPGLQMAWGVVIGHEPMPVGRWIGFALIWLALALLAADAVRRRTPRERTSTTPAEHVDRDESKSSSH

Sequences:

>Translated_312_residues
MTETRRNGLLFGIGAYVWWGLCPGFFLLLLPAGSLEILAHRIVWSVVFLLLVLAVARRLGDLLRLSWRTWLQLLAASALV
SANWGVYIYAATHSHVVDAALGYFINPLLSVALGVLVFRERINRSQQVALVLAVAAVVLLTVEIGAPPYIALALAVSFAL
YGLVKKVVTADPRVSVAVETLIALPFAGGYVLALELTDRGHFLSEGLAHTGLLLLAGPVTAIPLLLFGAAAQRLPLVTLG
LLFYINPGLQMAWGVVIGHEPMPVGRWIGFALIWLALALLAADAVRRRTPRERTSTTPAEHVDRDESKSSSH
>Mature_311_residues
TETRRNGLLFGIGAYVWWGLCPGFFLLLLPAGSLEILAHRIVWSVVFLLLVLAVARRLGDLLRLSWRTWLQLLAASALVS
ANWGVYIYAATHSHVVDAALGYFINPLLSVALGVLVFRERINRSQQVALVLAVAAVVLLTVEIGAPPYIALALAVSFALY
GLVKKVVTADPRVSVAVETLIALPFAGGYVLALELTDRGHFLSEGLAHTGLLLLAGPVTAIPLLLFGAAAQRLPLVTLGL
LFYINPGLQMAWGVVIGHEPMPVGRWIGFALIWLALALLAADAVRRRTPRERTSTTPAEHVDRDESKSSSH

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=36.3945578231293, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33714; Mature: 33583

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETRRNGLLFGIGAYVWWGLCPGFFLLLLPAGSLEILAHRIVWSVVFLLLVLAVARRLG
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLRLSWRTWLQLLAASALVSANWGVYIYAATHSHVVDAALGYFINPLLSVALGVLVFRE
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RINRSQQVALVLAVAAVVLLTVEIGAPPYIALALAVSFALYGLVKKVVTADPRVSVAVET
HHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIALPFAGGYVLALELTDRGHFLSEGLAHTGLLLLAGPVTAIPLLLFGAAAQRLPLVTLG
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLFYINPGLQMAWGVVIGHEPMPVGRWIGFALIWLALALLAADAVRRRTPRERTSTTPAE
HHHHHCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHH
HVDRDESKSSSH
HCCCCCCCCCCC
>Mature Secondary Structure 
TETRRNGLLFGIGAYVWWGLCPGFFLLLLPAGSLEILAHRIVWSVVFLLLVLAVARRLG
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLRLSWRTWLQLLAASALVSANWGVYIYAATHSHVVDAALGYFINPLLSVALGVLVFRE
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RINRSQQVALVLAVAAVVLLTVEIGAPPYIALALAVSFALYGLVKKVVTADPRVSVAVET
HHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIALPFAGGYVLALELTDRGHFLSEGLAHTGLLLLAGPVTAIPLLLFGAAAQRLPLVTLG
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLFYINPGLQMAWGVVIGHEPMPVGRWIGFALIWLALALLAADAVRRRTPRERTSTTPAE
HHHHHCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHH
HVDRDESKSSSH
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA