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The map label for this gene is 108800055

Identifier: 108800055

GI number: 108800055

Start: 3268539

End: 3269681

Strand: Reverse

Name: 108800055

Synonym: Mmcs_3089

Alternate gene names: NA

Gene position: 3269681-3268539 (Counterclockwise)

Preceding gene: 108800056

Following gene: 108800054

Centisome position: 57.31

GC content: 71.83

Gene sequence:

>1143_bases
TTGCTGGCCGCCCTCGCGGCGCCCACCGGCGACATCGCCGCGGCCGAGGACGCGCTCGCCGATGCCTTCGAACGCGCGCT
CCGGAGATGGCCGGTCGACGGTATCCCGGCCGAACCCGCCGCCTGGGTGATCACCGTCGCCCGCAACAGATTGCGCGACC
GCTGGCGCTCGGCCGGTCACCGCAGAGCCGCTCGTCTCGACGAGAACCTCGACGTGACAGCGGAATCCGTCGACTGGCCG
GCCATCCCGGACAAACGCCTGGAGCTCATGCTGGTCTGTGCGCATCCCTCGGTGGCGGTCAACGTCCGTACGCCGCTGAT
GCTGCAGGTGGTCATGGGTGTCGACGCGGCGGCGATCGCCGAGGCGTTCGCCGTCGAACCGGCGACCATGGCGCAGCGGC
TCGTACGGGCCAAGCGGCGTATCCGCGACACGGGTGTGCCATTCACCCTGCCGGAACGTGACGATCTGGCCGAGCGGCTG
CCCGCCGTGCTCGAATCGGTCTACGGCGTCTATGCCATCGACTGGCAGCGCGGCCCACCCGACGACCCGGGGGATTCGTT
GGCCGCCGAGGCGTTGCACCTGACCGCCCTGCTGACCGAGTTGCTGCCCGCCGATCCGGAGGTGCTCGGCCTGGCCGCGC
TGGTGTGTTTCGGCGAGGCGCGCCGCCCCGCGCGGCGTGGGGTCGAGGGCGCGTTCGTCGGCCTCGACGATCAGGACAGT
GGGCGGTGGGACCACGAGTTGATCGCCCGGGCCGAGGATCTGCTGCGGCGCGCGCACACCCACCGGCGGCCGGGCCGGTT
CCAGTACGAGGCGGCCATCCACTCGGCACACTGTCACCGCCCGGTGGATCGGCGGGCGCTGCGCAAGCTCTATCTGGCCC
TGCTGCGGGTGGCGCCGTCACTCGGTGCGGCGGTGGCGCTGGCGGCCCTCGACGGCGAGATCGACGGGCCGGACGCCGGT
CTGCGGGCACTCGCGGCGATCGATGACCCTGCGCTCGACCGGTTTCAACCGGCGTGGACCACCCGCGCACACCTTCTCGA
GCGCGCGGGCCGAACGGCCGAGGCAAATATCGCCTACCAGCGGGCACTCGCGATCACCAGCAACCCCGCACTGAGAGCGC
ATCTACGGCAACGCCTGCGGTGA

Upstream 100 bases:

>100_bases
CCCGTGGCGGTGACCTACTCGACCGGCCAGGGCTGGTTCAGCCCTGAATGACGGTGCCGCGGCCACGGTCGCCGACCTGA
GCCGCAGATCACACGGCCGG

Downstream 100 bases:

>100_bases
GAAACGCGAGTTCGTTTGCCGGACAGGTGTTTGCCTGGTGTTCAGCAATGTCCTAGCGTTTGCTAGGTGCAGCGGAAGGG
GCGGGCCAGGGCAGCGGCGC

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MLAALAAPTGDIAAAEDALADAFERALRRWPVDGIPAEPAAWVITVARNRLRDRWRSAGHRRAARLDENLDVTAESVDWP
AIPDKRLELMLVCAHPSVAVNVRTPLMLQVVMGVDAAAIAEAFAVEPATMAQRLVRAKRRIRDTGVPFTLPERDDLAERL
PAVLESVYGVYAIDWQRGPPDDPGDSLAAEALHLTALLTELLPADPEVLGLAALVCFGEARRPARRGVEGAFVGLDDQDS
GRWDHELIARAEDLLRRAHTHRRPGRFQYEAAIHSAHCHRPVDRRALRKLYLALLRVAPSLGAAVALAALDGEIDGPDAG
LRALAAIDDPALDRFQPAWTTRAHLLERAGRTAEANIAYQRALAITSNPALRAHLRQRLR

Sequences:

>Translated_380_residues
MLAALAAPTGDIAAAEDALADAFERALRRWPVDGIPAEPAAWVITVARNRLRDRWRSAGHRRAARLDENLDVTAESVDWP
AIPDKRLELMLVCAHPSVAVNVRTPLMLQVVMGVDAAAIAEAFAVEPATMAQRLVRAKRRIRDTGVPFTLPERDDLAERL
PAVLESVYGVYAIDWQRGPPDDPGDSLAAEALHLTALLTELLPADPEVLGLAALVCFGEARRPARRGVEGAFVGLDDQDS
GRWDHELIARAEDLLRRAHTHRRPGRFQYEAAIHSAHCHRPVDRRALRKLYLALLRVAPSLGAAVALAALDGEIDGPDAG
LRALAAIDDPALDRFQPAWTTRAHLLERAGRTAEANIAYQRALAITSNPALRAHLRQRLR
>Mature_380_residues
MLAALAAPTGDIAAAEDALADAFERALRRWPVDGIPAEPAAWVITVARNRLRDRWRSAGHRRAARLDENLDVTAESVDWP
AIPDKRLELMLVCAHPSVAVNVRTPLMLQVVMGVDAAAIAEAFAVEPATMAQRLVRAKRRIRDTGVPFTLPERDDLAERL
PAVLESVYGVYAIDWQRGPPDDPGDSLAAEALHLTALLTELLPADPEVLGLAALVCFGEARRPARRGVEGAFVGLDDQDS
GRWDHELIARAEDLLRRAHTHRRPGRFQYEAAIHSAHCHRPVDRRALRKLYLALLRVAPSLGAAVALAALDGEIDGPDAG
LRALAAIDDPALDRFQPAWTTRAHLLERAGRTAEANIAYQRALAITSNPALRAHLRQRLR

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 41594; Mature: 41594

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAALAAPTGDIAAAEDALADAFERALRRWPVDGIPAEPAAWVITVARNRLRDRWRSAGH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRAARLDENLDVTAESVDWPAIPDKRLELMLVCAHPSVAVNVRTPLMLQVVMGVDAAAIA
HHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHCCCHHHHH
EAFAVEPATMAQRLVRAKRRIRDTGVPFTLPERDDLAERLPAVLESVYGVYAIDWQRGPP
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCC
DDPGDSLAAEALHLTALLTELLPADPEVLGLAALVCFGEARRPARRGVEGAFVGLDDQDS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCC
GRWDHELIARAEDLLRRAHTHRRPGRFQYEAAIHSAHCHRPVDRRALRKLYLALLRVAPS
CCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LGAAVALAALDGEIDGPDAGLRALAAIDDPALDRFQPAWTTRAHLLERAGRTAEANIAYQ
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
RALAITSNPALRAHLRQRLR
HHEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MLAALAAPTGDIAAAEDALADAFERALRRWPVDGIPAEPAAWVITVARNRLRDRWRSAGH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRAARLDENLDVTAESVDWPAIPDKRLELMLVCAHPSVAVNVRTPLMLQVVMGVDAAAIA
HHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHCCCHHHHH
EAFAVEPATMAQRLVRAKRRIRDTGVPFTLPERDDLAERLPAVLESVYGVYAIDWQRGPP
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCC
DDPGDSLAAEALHLTALLTELLPADPEVLGLAALVCFGEARRPARRGVEGAFVGLDDQDS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCC
GRWDHELIARAEDLLRRAHTHRRPGRFQYEAAIHSAHCHRPVDRRALRKLYLALLRVAPS
CCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LGAAVALAALDGEIDGPDAGLRALAAIDDPALDRFQPAWTTRAHLLERAGRTAEANIAYQ
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
RALAITSNPALRAHLRQRLR
HHEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]