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The map label for this gene is ydeS [H]

Identifier: 108799972

GI number: 108799972

Start: 3177368

End: 3177952

Strand: Reverse

Name: ydeS [H]

Synonym: Mmcs_3006

Alternate gene names: 108799972

Gene position: 3177952-3177368 (Counterclockwise)

Preceding gene: 108799973

Following gene: 108799971

Centisome position: 55.7

GC content: 71.28

Gene sequence:

>585_bases
ATGACCGCCGGACGTCCCCGCGACGCGCGGGTCACCGAGGCGATCCTCGACGCGGTGTTCGCCGAACTCGCGGACAAGGG
GTTCGGTGGTCTGACGATGGACGCGGTCGCCCGCCGGGCGCGGGTCGGCAAGAGTGCGCTGTACCGCCGGTGGCCGTCGA
AAGTCGAGATGACGGCCGACCTGATGCGGGCGTTGAGCGTCACCACCGATCCCGCGCCCGATACGGGGTCGCTCGCCGGT
GATGTGCGGGCCCTGCTGGAGAACGTCCTCACCTGGCTGACCGACGATCGGGTGCGCCGTGTGTATCCCGATCTGATCGC
CGAGGCCCAGCGCACCCCGGCGCTCGGCGACGCTCTGATGGCCTACGTCGGCCTGCCCAGGCGCGCACGGGCCTTCGAGG
TGCTCGACCGCGCCGCCGAACGCGGTGAACTCGCCGTCGAGGCTGATCAGGAGGTTATTGTCGACGCATTGGCTGCGCTG
GTGTTCTGGCGGCTGATCGCGTTGGGGAAGCCGGTGTCCGCCCGGCACCTGGACCGGGTGGCCGCGGCCGTCTGCGCGAT
GGCGAGCGGGACCGGGTGGCGGTGA

Upstream 100 bases:

>100_bases
TTCGTGACGGCACCCAGTCCGCCGTCAGCGACACCGTCGAGCGACTCACCGGAGCCCGCCCACGCGGCTTCGCGGCCTAT
CTGCGCGCGACCGTGTCCGA

Downstream 100 bases:

>100_bases
GAACCGGGTTTGTCCTGCGTGGACCGAGTCGAGTAGGCTCGTCAGGTATCTGTGTGCGCGATAACAGATCACCCAACAAT
CAATCTGTCCCTACGAGTAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTAGRPRDARVTEAILDAVFAELADKGFGGLTMDAVARRARVGKSALYRRWPSKVEMTADLMRALSVTTDPAPDTGSLAG
DVRALLENVLTWLTDDRVRRVYPDLIAEAQRTPALGDALMAYVGLPRRARAFEVLDRAAERGELAVEADQEVIVDALAAL
VFWRLIALGKPVSARHLDRVAAAVCAMASGTGWR

Sequences:

>Translated_194_residues
MTAGRPRDARVTEAILDAVFAELADKGFGGLTMDAVARRARVGKSALYRRWPSKVEMTADLMRALSVTTDPAPDTGSLAG
DVRALLENVLTWLTDDRVRRVYPDLIAEAQRTPALGDALMAYVGLPRRARAFEVLDRAAERGELAVEADQEVIVDALAAL
VFWRLIALGKPVSARHLDRVAAAVCAMASGTGWR
>Mature_193_residues
TAGRPRDARVTEAILDAVFAELADKGFGGLTMDAVARRARVGKSALYRRWPSKVEMTADLMRALSVTTDPAPDTGSLAGD
VRALLENVLTWLTDDRVRRVYPDLIAEAQRTPALGDALMAYVGLPRRARAFEVLDRAAERGELAVEADQEVIVDALAALV
FWRLIALGKPVSARHLDRVAAAVCAMASGTGWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21014; Mature: 20883

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGRPRDARVTEAILDAVFAELADKGFGGLTMDAVARRARVGKSALYRRWPSKVEMTAD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LMRALSVTTDPAPDTGSLAGDVRALLENVLTWLTDDRVRRVYPDLIAEAQRTPALGDALM
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AYVGLPRRARAFEVLDRAAERGELAVEADQEVIVDALAALVFWRLIALGKPVSARHLDRV
HHHCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AAAVCAMASGTGWR
HHHHHHHHCCCCCC
>Mature Secondary Structure 
TAGRPRDARVTEAILDAVFAELADKGFGGLTMDAVARRARVGKSALYRRWPSKVEMTAD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LMRALSVTTDPAPDTGSLAGDVRALLENVLTWLTDDRVRRVYPDLIAEAQRTPALGDALM
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AYVGLPRRARAFEVLDRAAERGELAVEADQEVIVDALAALVFWRLIALGKPVSARHLDRV
HHHCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AAAVCAMASGTGWR
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]