| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is ifcA [H]
Identifier: 108799822
GI number: 108799822
Start: 3024130
End: 3025611
Strand: Reverse
Name: ifcA [H]
Synonym: Mmcs_2856
Alternate gene names: 108799822
Gene position: 3025611-3024130 (Counterclockwise)
Preceding gene: 108799823
Following gene: 108799817
Centisome position: 53.03
GC content: 67.27
Gene sequence:
>1482_bases ATGAGCACCGAGATTCCCGAAACCGTCGAGGCCGGTTCGGTCCACGAGTGGTCGGACGAGGTGGACGTGGTGGTGGTCGG GTTCGGCATCGCAGGCGGATGCGCCGCGGTCAGCGCTGCGGCCGCAGGCGCGCGGGTGTTGGTGCTGGAGAAGGCCGCCG CCGCGGGCGGCACCACCTCGATGGCGGGCGGTCACTTCTACCTCGGCGGGGGCACCGCCGTGCAGCAGGCCACCGGGCAC GACGACACCGCCGAGGAAATGTACAAGTACCTGGTCGCGATGTCGCGGGAACCCGAGCACGACAAGATCCGGGCGTACTG CGAGGGCAGCGTCGGACATTTCGAATGGCTCGAGAACCTCGGTTTCCAGTTCGAGCGCAGCTACTACCCGGGCAAAGTCG TGGTGCCGCCGGGCACGGAGGGGTTGTCGTACACGGGTAACGAGAAGGTGTGGCCGTTCTGCGAGCAGGCGAAGCCCGCA CCCCGAGGGCATTCGGTCCCGGTGCCCGGCGAACTGGGCGGCGCGGCGATGGTGATCGACCTGCTCCTGAAGCGGGCCGC CGACCTCGGCGTGCAGATCCGGTACGAGACCGGAGTGACGAACCTGGTGGTGGGGGACGGCGGTGTGGTCGGGGTGAAGT GGAAGCACTTCGCAGAGACCGGGGCCATCAAGGCCAAGGCGGTGATCATCGCCGCGGGCGGTTTCGCGATGAATCCCGAG ATGGTCGCCGAGTACACGCCCGCACTCGGGCATAAGCGGAAGACCAAGCACCACGGCGAGGTCGAACCCTACATCCTCGG CAACACCAACGACGACGGGCTCGGCATCAGGATGGGGATCTCGGCGGGCGGTGTCGCCAAGAACCTGGACCAGCTGTTCA TCACCGCAGCCGCCTATCCGCCGGAGATCCTGCTCACCGGTGTGATCGTCAACAAGGACGGGCAGCGGTTCGTCGCCGAG GACTCCTACCACTCCCGCACATCGGCTTTCGTGCTGGAGCAGCCGGATCAGACGGCCTACCTGATCGTCGACGAGGCGCA CATGCAGATGCCGGAGATGCCGCTGATCAAGTTCATCGACGGGTGGGAGACCGTCGCCGAGATGGAGGCCGCCCTCGGCA TTCCGGAGGGCAAGCTGGCCGCCACGCTCGAGCGGTACAACGAGCACGCCGCACGCGGCGAGGACCCCGACTTCCACAAG CAGCCGGATTACCTTGCGGCACAAGACAAGGGGCCGTGGGCCGCATTCGATCTGTCGCTCGGACGGGCGATGTACTCAGG CTTCACCATGGGCGGGCTCGCGGTGTCCATCGACGGTGAGGTGCTGCGCGAGGACGGATCGCCGATCCCGGGACTGTATG CGGCGGGTGCCTGTGCGTCGAACATCGCCCAGGACGGCAAGGGCTACGCGAGCGGCACCCAGTTGGGCGAGGGCTCGTTC TTCGGCAGACGCGCGGGAACACACGCGGCCCAGAGGGGATAG
Upstream 100 bases:
>100_bases ATGTCACCGCCGAGGACGCAGGCGTGCCCTACATCGAGATCGCTTGTCTCACAGACGACATCCGCACCTTCTTCGACTAC GTCAAACAGGAGCAGCAGCC
Downstream 100 bases:
>100_bases GGACCGCTAGAAGGGCGGTGGTTTGTTGCGTTCGGCGACGAGGTCGTCGTTGAGTCGGCGTTCTTCTTGGATGCGGCGGG CGCGGTTTTGGGCGCGGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MSTEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTSMAGGHFYLGGGTAVQQATGH DDTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENLGFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPA PRGHSVPVPGELGGAAMVIDLLLKRAADLGVQIRYETGVTNLVVGDGGVVGVKWKHFAETGAIKAKAVIIAAGGFAMNPE MVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAYPPEILLTGVIVNKDGQRFVAE DSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFIDGWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHK QPDYLAAQDKGPWAAFDLSLGRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGSF FGRRAGTHAAQRG
Sequences:
>Translated_493_residues MSTEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTSMAGGHFYLGGGTAVQQATGH DDTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENLGFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPA PRGHSVPVPGELGGAAMVIDLLLKRAADLGVQIRYETGVTNLVVGDGGVVGVKWKHFAETGAIKAKAVIIAAGGFAMNPE MVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAYPPEILLTGVIVNKDGQRFVAE DSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFIDGWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHK QPDYLAAQDKGPWAAFDLSLGRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGSF FGRRAGTHAAQRG >Mature_492_residues STEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTSMAGGHFYLGGGTAVQQATGHD DTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENLGFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAP RGHSVPVPGELGGAAMVIDLLLKRAADLGVQIRYETGVTNLVVGDGGVVGVKWKHFAETGAIKAKAVIIAAGGFAMNPEM VAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAYPPEILLTGVIVNKDGQRFVAED SYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFIDGWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHKQ PDYLAAQDKGPWAAFDLSLGRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGSFF GRRAGTHAAQRG
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=504, Percent_Identity=24.4047619047619, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 52136; Mature: 52005
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTS CCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC MAGGHFYLGGGTAVQQATGHDDTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENL CCCCEEEECCCCEEHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHC GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID CCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHH LLLKRAADLGVQIRYETGVTNLVVGDGGVVGVKWKHFAETGAIKAKAVIIAAGGFAMNPE HHHHHHHCCCEEEEEECCCEEEEECCCCEEEEEEHHHHHCCCEEEEEEEEEECCCCCCHH MVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAYP HHHHHCHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHEEEEECCCC PEILLTGVIVNKDGQRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFID CCEEEEEEEECCCCCEEEECCCCCCCCEEEEEECCCCEEEEEEEHHHHCCCCCCHHHHHC GWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHKQPDYLAAQDKGPWAAFDLSL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEHHH GRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGSF HHHHHCCEEECCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC FGRRAGTHAAQRG CCCCCCCCHHCCC >Mature Secondary Structure STEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTS CCCCCCHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC MAGGHFYLGGGTAVQQATGHDDTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENL CCCCEEEECCCCEEHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHC GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID CCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHH LLLKRAADLGVQIRYETGVTNLVVGDGGVVGVKWKHFAETGAIKAKAVIIAAGGFAMNPE HHHHHHHCCCEEEEEECCCEEEEECCCCEEEEEEHHHHHCCCEEEEEEEEEECCCCCCHH MVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAYP HHHHHCHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHEEEEECCCC PEILLTGVIVNKDGQRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFID CCEEEEEEEECCCCCEEEECCCCCCCCEEEEEECCCCEEEEEEEHHHHCCCCCCHHHHHC GWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHKQPDYLAAQDKGPWAAFDLSL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEHHH GRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGSF HHHHHCCEEECCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC FGRRAGTHAAQRG CCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]