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The map label for this gene is rbsC [H]

Identifier: 108799748

GI number: 108799748

Start: 2927839

End: 2928867

Strand: Reverse

Name: rbsC [H]

Synonym: Mmcs_2782

Alternate gene names: 108799748

Gene position: 2928867-2927839 (Counterclockwise)

Preceding gene: 108799749

Following gene: 108799747

Centisome position: 51.33

GC content: 65.4

Gene sequence:

>1029_bases
TTGAGCACCAAGGAAGACATCGCACCGGAATCCGGAGGCGCCGTCGTGGCGTCGCCGATCACCGGTGAACCAGTCAAGCT
GTTCTCCCGGGAATGGCTGGGCGCCATGGCATTGCGCTACGCCATGTTCATCATCCTGCTGATGGTGATCTTCTACTTCA
GCTACCGCAGCGCCCGGTTCTCCACCGTCGAGAACCTGATCACCATCCTGGTCGCGGCAGCGCCGTTCGCGCTGATCGCA
CTCGGCCAGACACTGGTGATCCTCACCGGTGGTATCGACCTCTCGGTGGGCAGCGTCATCGCCGTCTCGGCCATGGCCGG
TGCGGCCACCGCCAAGGCCAACCCCGGCCAGGTCTGGATGACCGTGCTGGTGGCGATGGGGGTCGGCCTCATCGTGGGCT
CGCTCAACGGGATCATGGTGTCGCGCCTCAACGTTCCGCCGTTCATCGCGACGTTGGGCACCCTGACCGCCGGCTCGGGT
GCGGCGTACGTCATCGGCGGGGGCGCGCCGATCAACGGTCTGCCCGCGGAGTTCGGCTCGATCGCCAACACCAAGATCCT
GGGCCTGCAGATCCCGGTGCTCCTGATGATCATCGGCATCATCGCGCTGGCCGTCATCATGAAGCGCACCACCTACGGCA
TGCGCGTCTACGCCGTCGGTGGCAACCGGAACGCCGCCGAGATCGCGGGTATCAACGCCAAGAACGTGCTGTTCAGCGTG
TACGCGTTCTCCGGTCTGCTCGCCGGCCTGTCCGGCGTCATGCTGGCCTCCCGAGTGATCTCCGGACCGCCCAACCTCGG
CCAGGGTTACGAACTGGACGCCATCGCGGCCGTCGTCATCGGTGGCGCCAGCCTGATGGGAGGGCGAGGCACCATCTGGG
GAACCGCGTTGGGCCTGTTGATGATCCAGACGCTGAACAACGGCCTGGACATCCTGGTGGTGCCCGCGTACTGGCAGGAC
GTCATCAAGGGTGTGCTCATCGTCTCCGCCGTCGCCATCGACGTGTGGTCCTCGAAACGGCGAACCTGA

Upstream 100 bases:

>100_bases
ACGCCCTCGACCATCCGGAGGTCCAGGAGTCGGTGTTCCGGCTGGCGACCGCGCTGGAGGCCAGACCCGATTCAATGCGC
ACGAACCAGGAGGCAGCATC

Downstream 100 bases:

>100_bases
CACCAAGATCCGGCGACAACCAACCACGAGAAGAGAAGGCACATGAAACTGGGGACAAAGACGTTCGCCATCGCCTCCGC
GGCTGCGCTGGGCCTCGGCC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSTKEDIAPESGGAVVASPITGEPVKLFSREWLGAMALRYAMFIILLMVIFYFSYRSARFSTVENLITILVAAAPFALIA
LGQTLVILTGGIDLSVGSVIAVSAMAGAATAKANPGQVWMTVLVAMGVGLIVGSLNGIMVSRLNVPPFIATLGTLTAGSG
AAYVIGGGAPINGLPAEFGSIANTKILGLQIPVLLMIIGIIALAVIMKRTTYGMRVYAVGGNRNAAEIAGINAKNVLFSV
YAFSGLLAGLSGVMLASRVISGPPNLGQGYELDAIAAVVIGGASLMGGRGTIWGTALGLLMIQTLNNGLDILVVPAYWQD
VIKGVLIVSAVAIDVWSSKRRT

Sequences:

>Translated_342_residues
MSTKEDIAPESGGAVVASPITGEPVKLFSREWLGAMALRYAMFIILLMVIFYFSYRSARFSTVENLITILVAAAPFALIA
LGQTLVILTGGIDLSVGSVIAVSAMAGAATAKANPGQVWMTVLVAMGVGLIVGSLNGIMVSRLNVPPFIATLGTLTAGSG
AAYVIGGGAPINGLPAEFGSIANTKILGLQIPVLLMIIGIIALAVIMKRTTYGMRVYAVGGNRNAAEIAGINAKNVLFSV
YAFSGLLAGLSGVMLASRVISGPPNLGQGYELDAIAAVVIGGASLMGGRGTIWGTALGLLMIQTLNNGLDILVVPAYWQD
VIKGVLIVSAVAIDVWSSKRRT
>Mature_341_residues
STKEDIAPESGGAVVASPITGEPVKLFSREWLGAMALRYAMFIILLMVIFYFSYRSARFSTVENLITILVAAAPFALIAL
GQTLVILTGGIDLSVGSVIAVSAMAGAATAKANPGQVWMTVLVAMGVGLIVGSLNGIMVSRLNVPPFIATLGTLTAGSGA
AYVIGGGAPINGLPAEFGSIANTKILGLQIPVLLMIIGIIALAVIMKRTTYGMRVYAVGGNRNAAEIAGINAKNVLFSVY
AFSGLLAGLSGVMLASRVISGPPNLGQGYELDAIAAVVIGGASLMGGRGTIWGTALGLLMIQTLNNGLDILVVPAYWQDV
IKGVLIVSAVAIDVWSSKRRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=39.6166134185303, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=36.4238410596026, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=32.6086956521739, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=29.5731707317073, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789992, Length=363, Percent_Identity=31.129476584022, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=40.650406504065, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788471, Length=282, Percent_Identity=34.3971631205674, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=32.5, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=33.8870431893688, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=30.3571428571429, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35182; Mature: 35051

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKEDIAPESGGAVVASPITGEPVKLFSREWLGAMALRYAMFIILLMVIFYFSYRSARF
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
STVENLITILVAAAPFALIALGQTLVILTGGIDLSVGSVIAVSAMAGAATAKANPGQVWM
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
TVLVAMGVGLIVGSLNGIMVSRLNVPPFIATLGTLTAGSGAAYVIGGGAPINGLPAEFGS
HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHCC
IANTKILGLQIPVLLMIIGIIALAVIMKRTTYGMRVYAVGGNRNAAEIAGINAKNVLFSV
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEECCCHHHHHHHH
YAFSGLLAGLSGVMLASRVISGPPNLGQGYELDAIAAVVIGGASLMGGRGTIWGTALGLL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHH
MIQTLNNGLDILVVPAYWQDVIKGVLIVSAVAIDVWSSKRRT
HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STKEDIAPESGGAVVASPITGEPVKLFSREWLGAMALRYAMFIILLMVIFYFSYRSARF
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
STVENLITILVAAAPFALIALGQTLVILTGGIDLSVGSVIAVSAMAGAATAKANPGQVWM
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
TVLVAMGVGLIVGSLNGIMVSRLNVPPFIATLGTLTAGSGAAYVIGGGAPINGLPAEFGS
HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHCC
IANTKILGLQIPVLLMIIGIIALAVIMKRTTYGMRVYAVGGNRNAAEIAGINAKNVLFSV
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEECCCHHHHHHHH
YAFSGLLAGLSGVMLASRVISGPPNLGQGYELDAIAAVVIGGASLMGGRGTIWGTALGLL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHH
MIQTLNNGLDILVVPAYWQDVIKGVLIVSAVAIDVWSSKRRT
HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]