Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 108799673

GI number: 108799673

Start: 2859019

End: 2860284

Strand: Reverse

Name: ygaD [C]

Synonym: Mmcs_2707

Alternate gene names: 108799673

Gene position: 2860284-2859019 (Counterclockwise)

Preceding gene: 108799675

Following gene: 108799669

Centisome position: 50.13

GC content: 72.43

Gene sequence:

>1266_bases
GTGAGCGCACGCGCAGGCATCGTCGTCACCGGAACCGAGGTGCTGACCGGCCGGGTCCAGGACCGCAACGGCCCGTGGAT
CGCCGACCGGCTCCTGGAACTGGGCGTCGAGTTGGCCCACATCACGATCTGCGGTGACCGCCCGGCGGACATCGAGGCGC
AGCTGCGCTTCCTCGCCGCCGAAGGCGTCGACCTCATCGTCACGAGCGGGGGGCTCGGACCCACCGCCGACGATCTCACC
GTGGCCACGGTCGCCCGGTTCTGCGGTCGTGAGTTGATCCTCGACACCGAACTCGAGCAGCGGATCGCCGACATCCTGCG
CCGGCTGATGGGCCGCCGCACCGACGTCGACTTCGACGCGCTGCGGGCGGCCAACCGCAAACAGGCCATGGTCCCCGACG
GTGCGACCGTGCTCGAGCCGGTCGGTACCGCGCCCGGCGTGGTCGTTCCCGGTTCGCCCACCGTGCTGGTGCTGCCCGGG
CCGCCGCGCGAGCTGCAACCGATGTGGCGCACCGCCGTGCAGACCGAGGCCCTCCGGTCGGCCATCGCCGGGCGCACCGA
GTACCGGCAGGACATGGTCCGCATGTTCGGGCTGCCCGAATCGGGGCTGGCCGAGACGCTGCGTGACGCCGAGCGGGACC
TCGCCGGATTCGACCGCCTGGAGATCACCACCTGCCTGCGGCGCGGTGAGCTCGAGATCGTCACCCGCTACGAACCCGAC
GCCGAACCGGTGTACCGCAACCTGCTCACGCTGCTGCGGGACCGGCACGGCTCGGCGATCTTCTCCGAGGACGGTTCACT
CGTCGACGATCAGGTCGCCGCGCTGCTCGCGGGGCACACCATCGCCACCGCCGAATCCTGCACCGGCGGAATGCTTTCCG
CGCGGCTGACCGACCGCGCCGGATCGTCGGCATATGTGGCCGGCGCGGCGGTGTGCTACGCCGACGCCGCGAAGGTGGAA
CTGCTCGGAGTACCCGCGGACCTGATCGCCGACCACGGCGCGGTGTCCGAGCCGGTGGCCGAAGCCATGGCCGACGGTGC
CCTGCGCCGCTTCGGCGCCGACGTCGCCGTCGCGATCACCGGGATCGCCGGGCCCGGCGGCGGAACCGAGCTCAAACCCG
TCGGCACGGTGTGCTTCTGCGTGCGCCGCGCCGACGGCCGCGTGGTGACCCGCACCGTCCGGCTCCCCGGCGACCGCAGC
GATGTGCGGGAGCGGTCGACCACCGTCGCCATGCATCTGCTGCGGCGCGCGCTGCAGGACGGGTGA

Upstream 100 bases:

>100_bases
GGGTCGTATCCGGGTGAGTGTGGTGGTCATGGAAGTAAGTTTCCGACCTCAACCAAAGTTCAGGTCAAGGCCCGAAAAGT
CACCGCGTAGGTTTGACGCC

Downstream 100 bases:

>100_bases
GCGCTCAGGTGCGGTCGGCGCGGTCCCACAGTTCGAGCATCGACCCCAGGATGGCCTGAGCCTGCCCCAGTCCGCCGAGA
TGGCTCTCACCCGGCAGGTG

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAAEGVDLIVTSGGLGPTADDLT
VATVARFCGRELILDTELEQRIADILRRLMGRRTDVDFDALRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPG
PPRELQPMWRTAVQTEALRSAIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRYEPD
AEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLTDRAGSSAYVAGAAVCYADAAKVE
LLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAVAITGIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRS
DVRERSTTVAMHLLRRALQDG

Sequences:

>Translated_421_residues
MSARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAAEGVDLIVTSGGLGPTADDLT
VATVARFCGRELILDTELEQRIADILRRLMGRRTDVDFDALRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPG
PPRELQPMWRTAVQTEALRSAIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRYEPD
AEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLTDRAGSSAYVAGAAVCYADAAKVE
LLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAVAITGIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRS
DVRERSTTVAMHLLRRALQDG
>Mature_420_residues
SARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAAEGVDLIVTSGGLGPTADDLTV
ATVARFCGRELILDTELEQRIADILRRLMGRRTDVDFDALRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPGP
PRELQPMWRTAVQTEALRSAIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRYEPDA
EPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLTDRAGSSAYVAGAAVCYADAAKVEL
LGVPADLIADHGAVSEPVAEAMADGALRRFGADVAVAITGIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRSD
VRERSTTVAMHLLRRALQDG

Specific function: Unknown

COG id: COG1058

COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=47.4358974358974, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1787818, Length=118, Percent_Identity=39.8305084745763, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788583, Length=167, Percent_Identity=32.3353293413174, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71993966, Length=171, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71993974, Length=171, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323832, Length=208, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 44778; Mature: 44646

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAA
CCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH
EGVDLIVTSGGLGPTADDLTVATVARFCGRELILDTELEQRIADILRRLMGRRTDVDFDA
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHH
LRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPGPPRELQPMWRTAVQTEALRS
HHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
AIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRYEPD
HHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCC
AEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLTDRA
CCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHCCC
GSSAYVAGAAVCYADAAKVELLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAVAIT
CCCEEHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
GIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRSDVRERSTTVAMHLLRRALQD
EECCCCCCCCCCHHHHHHEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure 
SARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAA
CCCCCEEEECCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH
EGVDLIVTSGGLGPTADDLTVATVARFCGRELILDTELEQRIADILRRLMGRRTDVDFDA
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHH
LRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPGPPRELQPMWRTAVQTEALRS
HHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
AIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRYEPD
HHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCC
AEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLTDRA
CCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHCCC
GSSAYVAGAAVCYADAAKVELLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAVAIT
CCCEEHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
GIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRSDVRERSTTVAMHLLRRALQD
EECCCCCCCCCCHHHHHHEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA