Click here to switch to the map view.

The map label for this gene is 108799637

Identifier: 108799637

GI number: 108799637

Start: 2821210

End: 2821854

Strand: Reverse

Name: 108799637

Synonym: Mmcs_2670

Alternate gene names: NA

Gene position: 2821854-2821210 (Counterclockwise)

Preceding gene: 108799639

Following gene: 108799636

Centisome position: 49.46

GC content: 69.46

Gene sequence:

>645_bases
GTGGCAGTCCCGAAGGGCGTGGAAACCGATGCCGATGCGTCGGTGGCCCCGCCGCGCGGGCGACGCCGTGACCCGCGCAC
GCAACAGGACATCCTCTCGGCCACGCGGCGGCTGCTCGTCCGTGACGGCTACGACCAGGTGTCCGTCGACGCGGTGGCGC
GCGAAGCCGGGGTGAGCCGACCCACCGTCTACCGCCGTTGGCCGTCGAAGGCCCACGTGGTCTTCGATGCCGCGTTCCAG
GTGAACGGGTCGAGCGAAATCGCCGCCGGGACCGGTGATTTCACCGCCGACCTCCGCAGGTTCCTGCGATCGGTGGTCGA
GTTCTGGCGCGAACCCGTGGTGTACGCCGCCACCCTGGGCATCCTCGCGGAACGCCACCGCTCTCCCGAATTGCGCATCC
GCGCCCAGCAGTTGCTCGACGAAGCGACCAGGACCCGCTTCACCGCACTGGTCCGCGACGGCATCGCACAGGGCGCCGTG
GCCGCCGACATGGACGCGGACTCGTTGTACGACACCGTGATCGGCAGCACCTTCTACGCGGTGTACGTCCGGGATGTCAC
CGACGGTGCCGACCTCCAGGCCTACCTCACCCACCTCTGCTCCCTCGCCACCCAGGGGGCAGCCGACAGAGACGAGAACC
GATGA

Upstream 100 bases:

>100_bases
TCATCGCCGATCGACCCGCGAGTGTTTCTGTTCTCAACTTTCTCGCCCCGATCTCCCGATTCTGGACACATATACGTGAC
AACGTGTAACGCTTTGCGAC

Downstream 100 bases:

>100_bases
CGCAGGCTGATCGACGCCACCCCGACCTGTCCGAGGCGTTCCGGGAGCTGCTCGACGAACTGCGGTTCGTCGAGGACAAG
TTGCTCGCCGCCGATCCGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MAVPKGVETDADASVAPPRGRRRDPRTQQDILSATRRLLVRDGYDQVSVDAVAREAGVSRPTVYRRWPSKAHVVFDAAFQ
VNGSSEIAAGTGDFTADLRRFLRSVVEFWREPVVYAATLGILAERHRSPELRIRAQQLLDEATRTRFTALVRDGIAQGAV
AADMDADSLYDTVIGSTFYAVYVRDVTDGADLQAYLTHLCSLATQGAADRDENR

Sequences:

>Translated_214_residues
MAVPKGVETDADASVAPPRGRRRDPRTQQDILSATRRLLVRDGYDQVSVDAVAREAGVSRPTVYRRWPSKAHVVFDAAFQ
VNGSSEIAAGTGDFTADLRRFLRSVVEFWREPVVYAATLGILAERHRSPELRIRAQQLLDEATRTRFTALVRDGIAQGAV
AADMDADSLYDTVIGSTFYAVYVRDVTDGADLQAYLTHLCSLATQGAADRDENR
>Mature_213_residues
AVPKGVETDADASVAPPRGRRRDPRTQQDILSATRRLLVRDGYDQVSVDAVAREAGVSRPTVYRRWPSKAHVVFDAAFQV
NGSSEIAAGTGDFTADLRRFLRSVVEFWREPVVYAATLGILAERHRSPELRIRAQQLLDEATRTRFTALVRDGIAQGAVA
ADMDADSLYDTVIGSTFYAVYVRDVTDGADLQAYLTHLCSLATQGAADRDENR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23572; Mature: 23440

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVPKGVETDADASVAPPRGRRRDPRTQQDILSATRRLLVRDGYDQVSVDAVAREAGVSR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PTVYRRWPSKAHVVFDAAFQVNGSSEIAAGTGDFTADLRRFLRSVVEFWREPVVYAATLG
CCHHHCCCCCEEEEEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
ILAERHRSPELRIRAQQLLDEATRTRFTALVRDGIAQGAVAADMDADSLYDTVIGSTFYA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEE
VYVRDVTDGADLQAYLTHLCSLATQGAADRDENR
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AVPKGVETDADASVAPPRGRRRDPRTQQDILSATRRLLVRDGYDQVSVDAVAREAGVSR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PTVYRRWPSKAHVVFDAAFQVNGSSEIAAGTGDFTADLRRFLRSVVEFWREPVVYAATLG
CCHHHCCCCCEEEEEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
ILAERHRSPELRIRAQQLLDEATRTRFTALVRDGIAQGAVAADMDADSLYDTVIGSTFYA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEE
VYVRDVTDGADLQAYLTHLCSLATQGAADRDENR
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]