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The map label for this gene is ydeS [H]

Identifier: 108799397

GI number: 108799397

Start: 2579855

End: 2580424

Strand: Reverse

Name: ydeS [H]

Synonym: Mmcs_2430

Alternate gene names: 108799397

Gene position: 2580424-2579855 (Counterclockwise)

Preceding gene: 108799399

Following gene: 108799396

Centisome position: 45.23

GC content: 72.28

Gene sequence:

>570_bases
ATGGCGAGACGTCACGGCGCGGAACTCGACGCCGCCATCCGGGCCGCGGTGCTGAAGCTGCTGGCCGACCACGGCCCCGG
CGCCGTGACCATGGAGTCGGTGGCCGCCGCGGCGCGGACGAGCAAGCCGGTCCTGTACCGGCGGTGGCCGGACCGGGCGA
GCCTCTTGCGGGACACGTTGATGCAGATCGCGACGGCGGCGATCCCCCACGACGACACCGGCAGCTTTCGCGGGGACATG
CTCGCGGTGTTGCGCGGCTGGGCCGTTCTGTTCACCGGACCCGACGCCGCGGTGATGAAGGCGGCCGTCGCGGCCGCCGC
CCACGACCCGGAGTTGACGGCGGCTTTGCGCAACGACGTGATCGGCTGGCGGAAACAGGAGATGGCCGCGCTGCTGCGAC
GCGGTATCGATCGCGGCGACGTGCGCCGCGACGTCCCGGTGGAGATCGCCCGTGAGCTCGGGCAGAGCGTGCTGTGGCAC
CGACTCCTGGTCACCGGGGATCCGATCACCGACGACCTGGTGGTCGCGCTGGTCGACGACGTGCTCGTCCCGTTCGTCGC
GCCGCGGTGA

Upstream 100 bases:

>100_bases
GGGACATCGATGACATCTGAAGCCTCCAAGAAACGGTTACATATCTTCGACGCTAGAACCATCGCGTAAGATACGCAAGC
GTTTCTTCGGGAGGATCGGT

Downstream 100 bases:

>100_bases
ACGGACGGGCCTACTACGAGTCGTAGTTAGCGCTGCTCTACCATCGGATTCGTGCCCGTCAGACGACTCTTCCTGCGGCT
GGTCGACCTGCTGCCGCTGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MARRHGAELDAAIRAAVLKLLADHGPGAVTMESVAAAARTSKPVLYRRWPDRASLLRDTLMQIATAAIPHDDTGSFRGDM
LAVLRGWAVLFTGPDAAVMKAAVAAAAHDPELTAALRNDVIGWRKQEMAALLRRGIDRGDVRRDVPVEIARELGQSVLWH
RLLVTGDPITDDLVVALVDDVLVPFVAPR

Sequences:

>Translated_189_residues
MARRHGAELDAAIRAAVLKLLADHGPGAVTMESVAAAARTSKPVLYRRWPDRASLLRDTLMQIATAAIPHDDTGSFRGDM
LAVLRGWAVLFTGPDAAVMKAAVAAAAHDPELTAALRNDVIGWRKQEMAALLRRGIDRGDVRRDVPVEIARELGQSVLWH
RLLVTGDPITDDLVVALVDDVLVPFVAPR
>Mature_188_residues
ARRHGAELDAAIRAAVLKLLADHGPGAVTMESVAAAARTSKPVLYRRWPDRASLLRDTLMQIATAAIPHDDTGSFRGDML
AVLRGWAVLFTGPDAAVMKAAVAAAAHDPELTAALRNDVIGWRKQEMAALLRRGIDRGDVRRDVPVEIARELGQSVLWHR
LLVTGDPITDDLVVALVDDVLVPFVAPR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20433; Mature: 20302

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRHGAELDAAIRAAVLKLLADHGPGAVTMESVAAAARTSKPVLYRRWPDRASLLRDTL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
MQIATAAIPHDDTGSFRGDMLAVLRGWAVLFTGPDAAVMKAAVAAAAHDPELTAALRNDV
HHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHH
IGWRKQEMAALLRRGIDRGDVRRDVPVEIARELGQSVLWHRLLVTGDPITDDLVVALVDD
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VLVPFVAPR
HHHHHCCCC
>Mature Secondary Structure 
ARRHGAELDAAIRAAVLKLLADHGPGAVTMESVAAAARTSKPVLYRRWPDRASLLRDTL
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
MQIATAAIPHDDTGSFRGDMLAVLRGWAVLFTGPDAAVMKAAVAAAAHDPELTAALRNDV
HHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHH
IGWRKQEMAALLRRGIDRGDVRRDVPVEIARELGQSVLWHRLLVTGDPITDDLVVALVDD
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VLVPFVAPR
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]