Click here to switch to the map view.

The map label for this gene is 108799191

Identifier: 108799191

GI number: 108799191

Start: 2363538

End: 2364014

Strand: Reverse

Name: 108799191

Synonym: Mmcs_2224

Alternate gene names: NA

Gene position: 2364014-2363538 (Counterclockwise)

Preceding gene: 108799192

Following gene: 108799190

Centisome position: 41.43

GC content: 74.21

Gene sequence:

>477_bases
ATGCGACCGTTCGAAGACGTGGTGGCCGAACACGGGCCCGTCGTGCTGCGGGTCTGCCGCGCCGTCGTGGGCCCGGTCGA
CGCGGAGGACGCCTGGTCGGAGACCTTCCTGTCGGCGCTGCGGGCCTACCCCGACCTGCCCGCCGACGCCAACGTCGAGG
CCTGGCTGGTGACGATCGCGCACCGGCGCGCACTCGACGTCGGCCGCGCCAACTCCCGCCGGGCCGTCCCGACCGGCACC
GTCCCCGACAGCCCCGCCGTGGGCGGCGACCCCGCGGACCGACACCCCGACCTGTGGGCCGCGCTCGAGTCACTGCCCAC
CAAACAACGGCAGGCCGTCGCCTACCACCACATCGCGGGTCTGCCGTTCGCCGAGATCGCGGGACTGCTCGGCAACTCCC
CCGACGCCGCCCGCCGCGCGTGTGCCGACGGCTTGAGCAGACTGCGCTCGATCTACCGCGAGGAGCCCCTCCCATGA

Upstream 100 bases:

>100_bases
GGGCGCAGACCGATCTCATCGGCCTGCTCGATTCGATCACCGGCGCCGGAACGGACTGATCTCACGTCAGGCCCGCCGCC
GGCGTCTACAGGATGTGAGG

Downstream 100 bases:

>100_bases
CCGACGACACCACATTGGCCGGCCTGCACGCGCGGTTGAGCGCCCGAGCCGACGCCGAGGGACTCCTCGACGTCGCCTAC
CGGACCGTCGACACCCCCGT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Subunit; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRPFEDVVAEHGPVVLRVCRAVVGPVDAEDAWSETFLSALRAYPDLPADANVEAWLVTIAHRRALDVGRANSRRAVPTGT
VPDSPAVGGDPADRHPDLWAALESLPTKQRQAVAYHHIAGLPFAEIAGLLGNSPDAARRACADGLSRLRSIYREEPLP

Sequences:

>Translated_158_residues
MRPFEDVVAEHGPVVLRVCRAVVGPVDAEDAWSETFLSALRAYPDLPADANVEAWLVTIAHRRALDVGRANSRRAVPTGT
VPDSPAVGGDPADRHPDLWAALESLPTKQRQAVAYHHIAGLPFAEIAGLLGNSPDAARRACADGLSRLRSIYREEPLP
>Mature_158_residues
MRPFEDVVAEHGPVVLRVCRAVVGPVDAEDAWSETFLSALRAYPDLPADANVEAWLVTIAHRRALDVGRANSRRAVPTGT
VPDSPAVGGDPADRHPDLWAALESLPTKQRQAVAYHHIAGLPFAEIAGLLGNSPDAARRACADGLSRLRSIYREEPLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17014; Mature: 17014

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFEDVVAEHGPVVLRVCRAVVGPVDAEDAWSETFLSALRAYPDLPADANVEAWLVTIA
CCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
HRRALDVGRANSRRAVPTGTVPDSPAVGGDPADRHPDLWAALESLPTKQRQAVAYHHIAG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
LPFAEIAGLLGNSPDAARRACADGLSRLRSIYREEPLP
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRPFEDVVAEHGPVVLRVCRAVVGPVDAEDAWSETFLSALRAYPDLPADANVEAWLVTIA
CCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
HRRALDVGRANSRRAVPTGTVPDSPAVGGDPADRHPDLWAALESLPTKQRQAVAYHHIAG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
LPFAEIAGLLGNSPDAARRACADGLSRLRSIYREEPLP
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA