| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is ykvO [H]
Identifier: 108798445
GI number: 108798445
Start: 1606205
End: 1606756
Strand: Direct
Name: ykvO [H]
Synonym: Mmcs_1474
Alternate gene names: 108798445
Gene position: 1606205-1606756 (Clockwise)
Preceding gene: 108798442
Following gene: 108798446
Centisome position: 28.15
GC content: 67.21
Gene sequence:
>552_bases ATGCGTCTCGCGAACAAGGTAACCCTCGTCACCGGCGGGAGCGCGGGCCTTGGCCTGGCGATTGCCCAGAGATTCGGCAG TGAAGGCGCCCACGTCTATATCACGGGGCGACGGCGGGAGGCGCTCGAAGCCGCGAGGGCTTCCATCGAGGGACGTGTCA CGGCGCTCACCGCGGACGCTACGGTCCCCGGTGATCTCGACCTTCTGATCGAGACGATCCGCCGGGAGAGCGGGCACCTC GACGTCGTCGTCGCCAACGCCGGGAGCATCGAGCGGATGAACTTCGGGGACGTGACCGAGGAACATTTCGACCGCACCTT CGACCTCAACGCCCGCGGCACACTGTTCACCGTCCAGAAGGCGCTGCTCACCGTCCAGAAGGCGCTGCCGCTTCTACGAA CAGGCGGCTCGATAGTCCTGCTGGGCTCGGTCACTGCGCTCCAGGGGCACCCCGGGGCGGGGACTTACAGCGCGGCGAAG GCTGCCGTACGCTCCTACGCGCGCACGTGGTCAGCAGAGTTCGGCGACAAGGGCCTCCGGGTCGAGCAATGA
Upstream 100 bases:
>100_bases TGGTGCCCACAGCCAGCACCAGACCCTGCGATGCCAGCTAAAAGCCCGTCAAGGCAAGGCAATTGGGTCCGTCAGCCGCA CATCGACTCAAGGAGAAAGC
Downstream 100 bases:
>100_bases TCAATACCTGTGGATGAGCCTCGGTGAGGGGGCGTGAAAGTGGGCGCACCTTCCCGAGGATGATCTGAATATCCGAAGGT CCGATCATGAGCCGGCGTTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MRLANKVTLVTGGSAGLGLAIAQRFGSEGAHVYITGRRREALEAARASIEGRVTALTADATVPGDLDLLIETIRRESGHL DVVVANAGSIERMNFGDVTEEHFDRTFDLNARGTLFTVQKALLTVQKALPLLRTGGSIVLLGSVTALQGHPGAGTYSAAK AAVRSYARTWSAEFGDKGLRVEQ
Sequences:
>Translated_183_residues MRLANKVTLVTGGSAGLGLAIAQRFGSEGAHVYITGRRREALEAARASIEGRVTALTADATVPGDLDLLIETIRRESGHL DVVVANAGSIERMNFGDVTEEHFDRTFDLNARGTLFTVQKALLTVQKALPLLRTGGSIVLLGSVTALQGHPGAGTYSAAK AAVRSYARTWSAEFGDKGLRVEQ >Mature_183_residues MRLANKVTLVTGGSAGLGLAIAQRFGSEGAHVYITGRRREALEAARASIEGRVTALTADATVPGDLDLLIETIRRESGHL DVVVANAGSIERMNFGDVTEEHFDRTFDLNARGTLFTVQKALLTVQKALPLLRTGGSIVLLGSVTALQGHPGAGTYSAAK AAVRSYARTWSAEFGDKGLRVEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=32.2751322751323, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=30.8510638297872, Blast_Score=91, Evalue=5e-19, Organism=Homo sapiens, GI126723750, Length=187, Percent_Identity=28.3422459893048, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI5031737, Length=186, Percent_Identity=27.9569892473118, Blast_Score=74, Evalue=7e-14, Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=27.9569892473118, Blast_Score=74, Evalue=7e-14, Organism=Homo sapiens, GI40254992, Length=179, Percent_Identity=29.608938547486, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI40807363, Length=176, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=6e-11, Organism=Escherichia coli, GI1789378, Length=191, Percent_Identity=32.9842931937173, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=6e-16, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI2367365, Length=183, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1789208, Length=182, Percent_Identity=28.021978021978, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=25.8426966292135, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=36.2694300518135, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562904, Length=189, Percent_Identity=32.8042328042328, Blast_Score=86, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=32.4742268041237, Blast_Score=85, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193204405, Length=194, Percent_Identity=36.0824742268041, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17562990, Length=190, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=31.4720812182741, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17560220, Length=193, Percent_Identity=33.6787564766839, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17560332, Length=193, Percent_Identity=33.160621761658, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565030, Length=196, Percent_Identity=33.6734693877551, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562906, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17562908, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538480, Length=190, Percent_Identity=31.0526315789474, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17563726, Length=190, Percent_Identity=29.4736842105263, Blast_Score=73, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17551412, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17531453, Length=192, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17544670, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI72000259, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17508895, Length=174, Percent_Identity=26.4367816091954, Blast_Score=66, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=27.3684210526316, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=181, Percent_Identity=29.2817679558011, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=35.3260869565217, Blast_Score=97, Evalue=4e-21, Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=32.4468085106383, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=30.1075268817204, Blast_Score=80, Evalue=6e-16, Organism=Drosophila melanogaster, GI28571526, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=34.2391304347826, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=31.3186813186813, Blast_Score=77, Evalue=7e-15, Organism=Drosophila melanogaster, GI17737361, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24639444, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 19376; Mature: 19376
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLANKVTLVTGGSAGLGLAIAQRFGSEGAHVYITGRRREALEAARASIEGRVTALTADA CCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC TVPGDLDLLIETIRRESGHLDVVVANAGSIERMNFGDVTEEHFDRTFDLNARGTLFTVQK CCCCCHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCHHHCCCEECCCCCCHHHHHHH ALLTVQKALPLLRTGGSIVLLGSVTALQGHPGAGTYSAAKAAVRSYARTWSAEFGDKGLR HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE VEQ ECC >Mature Secondary Structure MRLANKVTLVTGGSAGLGLAIAQRFGSEGAHVYITGRRREALEAARASIEGRVTALTADA CCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC TVPGDLDLLIETIRRESGHLDVVVANAGSIERMNFGDVTEEHFDRTFDLNARGTLFTVQK CCCCCHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCHHHCCCEECCCCCCHHHHHHH ALLTVQKALPLLRTGGSIVLLGSVTALQGHPGAGTYSAAKAAVRSYARTWSAEFGDKGLR HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE VEQ ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]