Click here to switch to the map view.

The map label for this gene is ylbL [H]

Identifier: 108798385

GI number: 108798385

Start: 1531650

End: 1532687

Strand: Direct

Name: ylbL [H]

Synonym: Mmcs_1414

Alternate gene names: 108798385

Gene position: 1531650-1532687 (Clockwise)

Preceding gene: 108798381

Following gene: 108798386

Centisome position: 26.85

GC content: 67.15

Gene sequence:

>1038_bases
GTGGGCGGCGTGAACAGGCGGATTCTGACGCTGCTGATCGCGCTCGTCCCGGTCGTGGCGTTCGGCGTGCTGCTCTCTGC
GGTGACGGTCCCGTTCGTGTCGCTGGGCCCCGGACCCACGTTCGACACGCTCGGCGAGGTGGACGGCAAAGAGGTCGTCG
ACATCACCGGCACCGAGGTGAAGCCGACGTCGGGGCACCTGAACATGACCACGGTGTCGCAGCGCGATGGGCTGACCCTG
GCGCAAGCTCTGACGCTGTGGATGTCGGGCCGCGAGCAGTTGGTGCCCCGCGAACTGGTCTACCCGCCCGACAAGAGCAA
GGACGAGATCGACGAGGCCAACACCGCCGATTTCCGCAACTCGGAGGCCAACGCCGAGTACGCCGCGCTGTCGTACCTGA
AGTATCCGCGCGCGGTCACCGTCGAGAGCGTGACCGATCCCGGTCCGTCGGCGGGCAAGCTCAAGGAGGGCGACGCGATC
GACGCGGTCAACGGCAAGCCGGTGGCCACCGTCGACGAGTTCCAGGCTTTGTTGAAGACCACCAAACCCGGTGACGAACT
GGTCCTCGACTTCCGGCGCAAGGACGAGAACGATCCGCTCGGGACCACCACCGTCGAACTCGGCACGAACCCCGACCGCG
ACTACGGGTACCTCGGCATCGGCGTCATCGACGCACCCTGGGCGTCGTTCAAGATCGACTTCAACCTGGCCAACATCGGC
GGGCCGTCGGCGGGCCTGATGTTCAGCCTCGCGGTGGTCGACAAACTCACCTCGGGCGACCTCAACGACGGCAAGTTCGT
CGCGGGCACCGGCACCATCACCGGCGACGGGGAGGTCGGGTCGATCGGCGGCATCACGCACAAGATGGTCGGTGCGCGCG
ACGCCGGGGCCACCGTGTTTCTCGTGCCCGCCGACAACTGCGCCGAGGCCAAGTCCGATCCGCAGGACGGGCTGGAACTG
GTCAAGGTCGGCACACTGACCGAAGCCGTCGACGCGCTCAACGCGATTTCCGCTGGTGGCGAACCGCCACGGTGCTGA

Upstream 100 bases:

>100_bases
GAAAGGCAGGTCAGCCATGCCGTCAACGGTACTCACCGGCGCCGGGTGGTGCGGTGTGCCCGGTCACGCTGTCAGTGAAC
GGGCGCGGCGCTCCCTTACT

Downstream 100 bases:

>100_bases
CCGAGGCGTGGGCAGTCGATGCGTAGAGTTGGGGCACGTCGGACACGACGTCCCCTTTCCCGTGAGTGAAATTGGAGACA
CCAAGTGGGTATGCGGCCCC

Product: PDZ/DHR/GLGF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MGGVNRRILTLLIALVPVVAFGVLLSAVTVPFVSLGPGPTFDTLGEVDGKEVVDITGTEVKPTSGHLNMTTVSQRDGLTL
AQALTLWMSGREQLVPRELVYPPDKSKDEIDEANTADFRNSEANAEYAALSYLKYPRAVTVESVTDPGPSAGKLKEGDAI
DAVNGKPVATVDEFQALLKTTKPGDELVLDFRRKDENDPLGTTTVELGTNPDRDYGYLGIGVIDAPWASFKIDFNLANIG
GPSAGLMFSLAVVDKLTSGDLNDGKFVAGTGTITGDGEVGSIGGITHKMVGARDAGATVFLVPADNCAEAKSDPQDGLEL
VKVGTLTEAVDALNAISAGGEPPRC

Sequences:

>Translated_345_residues
MGGVNRRILTLLIALVPVVAFGVLLSAVTVPFVSLGPGPTFDTLGEVDGKEVVDITGTEVKPTSGHLNMTTVSQRDGLTL
AQALTLWMSGREQLVPRELVYPPDKSKDEIDEANTADFRNSEANAEYAALSYLKYPRAVTVESVTDPGPSAGKLKEGDAI
DAVNGKPVATVDEFQALLKTTKPGDELVLDFRRKDENDPLGTTTVELGTNPDRDYGYLGIGVIDAPWASFKIDFNLANIG
GPSAGLMFSLAVVDKLTSGDLNDGKFVAGTGTITGDGEVGSIGGITHKMVGARDAGATVFLVPADNCAEAKSDPQDGLEL
VKVGTLTEAVDALNAISAGGEPPRC
>Mature_344_residues
GGVNRRILTLLIALVPVVAFGVLLSAVTVPFVSLGPGPTFDTLGEVDGKEVVDITGTEVKPTSGHLNMTTVSQRDGLTLA
QALTLWMSGREQLVPRELVYPPDKSKDEIDEANTADFRNSEANAEYAALSYLKYPRAVTVESVTDPGPSAGKLKEGDAID
AVNGKPVATVDEFQALLKTTKPGDELVLDFRRKDENDPLGTTTVELGTNPDRDYGYLGIGVIDAPWASFKIDFNLANIGG
PSAGLMFSLAVVDKLTSGDLNDGKFVAGTGTITGDGEVGSIGGITHKMVGARDAGATVFLVPADNCAEAKSDPQDGLELV
KVGTLTEAVDALNAISAGGEPPRC

Specific function: Unknown

COG id: COG3480

COG function: function code T; Predicted secreted protein containing a PDZ domain

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF00595 PDZ [H]

EC number: NA

Molecular weight: Translated: 36047; Mature: 35916

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGVNRRILTLLIALVPVVAFGVLLSAVTVPFVSLGPGPTFDTLGEVDGKEVVDITGTEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHCCCCCCEEEEECCCEE
KPTSGHLNMTTVSQRDGLTLAQALTLWMSGREQLVPRELVYPPDKSKDEIDEANTADFRN
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCHHHCCCCCCCHHHHCCCCCCCCCC
SEANAEYAALSYLKYPRAVTVESVTDPGPSAGKLKEGDAIDAVNGKPVATVDEFQALLKT
CCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHC
TKPGDELVLDFRRKDENDPLGTTTVELGTNPDRDYGYLGIGVIDAPWASFKIDFNLANIG
CCCCHHEEEEEHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCC
GPSAGLMFSLAVVDKLTSGDLNDGKFVAGTGTITGDGEVGSIGGITHKMVGARDAGATVF
CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHCCCCCCCEEE
LVPADNCAEAKSDPQDGLELVKVGTLTEAVDALNAISAGGEPPRC
EEECCCHHHCCCCHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GGVNRRILTLLIALVPVVAFGVLLSAVTVPFVSLGPGPTFDTLGEVDGKEVVDITGTEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHCCCCCCEEEEECCCEE
KPTSGHLNMTTVSQRDGLTLAQALTLWMSGREQLVPRELVYPPDKSKDEIDEANTADFRN
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCHHHCCCCCCCHHHHCCCCCCCCCC
SEANAEYAALSYLKYPRAVTVESVTDPGPSAGKLKEGDAIDAVNGKPVATVDEFQALLKT
CCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHC
TKPGDELVLDFRRKDENDPLGTTTVELGTNPDRDYGYLGIGVIDAPWASFKIDFNLANIG
CCCCHHEEEEEHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCC
GPSAGLMFSLAVVDKLTSGDLNDGKFVAGTGTITGDGEVGSIGGITHKMVGARDAGATVF
CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHCCCCCCCEEE
LVPADNCAEAKSDPQDGLELVKVGTLTEAVDALNAISAGGEPPRC
EEECCCHHHCCCCHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]