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The map label for this gene is ymdB [C]

Identifier: 108763953

GI number: 108763953

Start: 86056

End: 86520

Strand: Direct

Name: ymdB [C]

Synonym: MXAN_0076

Alternate gene names: 108763953

Gene position: 86056-86520 (Clockwise)

Preceding gene: 108763117

Following gene: 108757973

Centisome position: 0.94

GC content: 68.39

Gene sequence:

>465_bases
ATGCCCGTCTCTGTCGTCGAAGGGGATTTGCTGGACCAGCCGGTGGAGGCCATCGTCAATGCCTGGAACCGGAACATCAT
CCCCTGGTGGCTGCTGCTGCCGCAGGGAGTGTCCGGCGCCATCAAGCGCCGGGGCGGGGTCGGGCCCTTCCGCGAGGTGG
CGAGGGCAGGCCCCATGCCCCTGGGCTCGGCGGTGGTGACCTCCGCCGGGCGGTTGCCATTCAAAGCCATCATCCACGTG
GCGGGCATCGACATGCTGTGGCGCGCCTCGGAGCGCTCCATCCAGGACTCGGTCCGCAATGCCCTGGCGAAGGCCCGCGA
GCAGGGATTTCGCTCCGTCGCCTTCCCCGTCATTGGCGCGGGCTCCGGAAGCTTTGATGAAGCACGCGCGCTGGAGCTGA
TGCGCCAGGTCCTGGATGTGGAAGCTGGCGCCCTCGACGTGAGCGTCGTGCGCTTCCGGCCATAG

Upstream 100 bases:

>100_bases
AGGCTGGAGCCCCAAGGCCACGGAGCACACGCACACGCACGCGTGCGACTGAGCCCCCAGGCACCCCCATCCGAGGCGGG
CTGGCGCTAGAGTCCGCGCC

Downstream 100 bases:

>100_bases
GTCTCGTCAGGTGAATGCAGGGCCCCGGAACACGGGAGCAGCAGTTGTTCGATGTCAGACCCTGCGACTAATTCTCGCTT
TGCCTTGAATCAATCGAGGC

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPVSVVEGDLLDQPVEAIVNAWNRNIIPWWLLLPQGVSGAIKRRGGVGPFREVARAGPMPLGSAVVTSAGRLPFKAIIHV
AGIDMLWRASERSIQDSVRNALAKAREQGFRSVAFPVIGAGSGSFDEARALELMRQVLDVEAGALDVSVVRFRP

Sequences:

>Translated_154_residues
MPVSVVEGDLLDQPVEAIVNAWNRNIIPWWLLLPQGVSGAIKRRGGVGPFREVARAGPMPLGSAVVTSAGRLPFKAIIHV
AGIDMLWRASERSIQDSVRNALAKAREQGFRSVAFPVIGAGSGSFDEARALELMRQVLDVEAGALDVSVVRFRP
>Mature_153_residues
PVSVVEGDLLDQPVEAIVNAWNRNIIPWWLLLPQGVSGAIKRRGGVGPFREVARAGPMPLGSAVVTSAGRLPFKAIIHVA
GIDMLWRASERSIQDSVRNALAKAREQGFRSVAFPVIGAGSGSFDEARALELMRQVLDVEAGALDVSVVRFRP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Escherichia coli, GI1787283, Length=139, Percent_Identity=35.2517985611511, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 16580; Mature: 16449

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSVVEGDLLDQPVEAIVNAWNRNIIPWWLLLPQGVSGAIKRRGGVGPFREVARAGPMP
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHCCCCCHHHHHHHCCCCC
LGSAVVTSAGRLPFKAIIHVAGIDMLWRASERSIQDSVRNALAKAREQGFRSVAFPVIGA
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEC
GSGSFDEARALELMRQVLDVEAGALDVSVVRFRP
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
>Mature Secondary Structure 
PVSVVEGDLLDQPVEAIVNAWNRNIIPWWLLLPQGVSGAIKRRGGVGPFREVARAGPMP
CCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHCCCCCHHHHHHHCCCCC
LGSAVVTSAGRLPFKAIIHVAGIDMLWRASERSIQDSVRNALAKAREQGFRSVAFPVIGA
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEC
GSGSFDEARALELMRQVLDVEAGALDVSVVRFRP
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]