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The map label for this gene is radC [C]

Identifier: 108763923

GI number: 108763923

Start: 2290354

End: 2291079

Strand: Reverse

Name: radC [C]

Synonym: MXAN_1952

Alternate gene names: 108763923

Gene position: 2291079-2290354 (Counterclockwise)

Preceding gene: 108761303

Following gene: 108763555

Centisome position: 25.07

GC content: 72.59

Gene sequence:

>726_bases
GTGAGGGCGCGAGGGGTGGGAGGCGCGGAGGAGTCGCGGGAGCGCCTCTTCCGGTTGGGGGCGGCGGCACTCACCGACCC
GGAGCTGTTGTGCGTGGTGTGGAGCTCCGGGCCTCGCGCGCCTGGAGCGTGGGCGGTGGCGGGGGCCCTGCTGTCGGAGG
GCGGTGGGCTGAAGGGACTGGTGCAGCAGGAGCCCCTGGCGCTGAGTCTGCGGCCCGGCGTGGGGCCTGTCCGGGCGGCG
CAGGCACTGGCCGCGCTGGAGCTGGGCCGCCGCTCGCAGCGTGCCCGGGAGCGCAGGCCCAGGCTGCGCACGCCGAAGGA
GATTGCGGCGTACCTGGCACCGGTGCTGGGGGCGCTGCGGCGCGAGGTGTTCCACGTCTTGTGCTTCAACGCGCGCAACG
TGCTGGTGCATGACGCACGCGTGGCGGAGGGCACCATGAACACCTGCCCGGTGGACCCGCGGGAGGTGTTCGCCGCGGCG
CTCACCTCGCGCGCCACGTCCATCGTGCTGGCACACAACCACCCTTCGGGAGACCCGGAGCCCAGCGTCCAGGACCTGGG
CCTGACGCGGCATCTGGTCGCGGGGGCGCAACTGCTCAACATCAAGGTGCTGGACCACGTGGTGATGGGAGACGGCGGCT
ACGTGTCGATGCTGGAACGCGGGCTGATGCCGGACGAAGCACAGGAGAAACGGCGGGCGTGGAGCGCGAATGGAGGCGGC
GGATGA

Upstream 100 bases:

>100_bases
GTAGCACAAGCAGGCACACGGATTGCTTTGTCCCCGCCCCGTGGAGGGCGGCGGGATGGAGCAGGCGGCGGCGGGAGCGG
CGTGGGCGGGCGAAGGGTCG

Downstream 100 bases:

>100_bases
TGGTGAGCATGGTGGGGCTGTGGGGAGCGGTGCAGGTGGAGCTGCTGGAGGACGTCCGGGCGCAAGTGGTGCGGCTGGAC
ACCGGACAGGCATGCACGGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRARGVGGAEESRERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGLVQQEPLALSLRPGVGPVRAA
QALAALELGRRSQRARERRPRLRTPKEIAAYLAPVLGALRREVFHVLCFNARNVLVHDARVAEGTMNTCPVDPREVFAAA
LTSRATSIVLAHNHPSGDPEPSVQDLGLTRHLVAGAQLLNIKVLDHVVMGDGGYVSMLERGLMPDEAQEKRRAWSANGGG
G

Sequences:

>Translated_241_residues
MRARGVGGAEESRERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGLVQQEPLALSLRPGVGPVRAA
QALAALELGRRSQRARERRPRLRTPKEIAAYLAPVLGALRREVFHVLCFNARNVLVHDARVAEGTMNTCPVDPREVFAAA
LTSRATSIVLAHNHPSGDPEPSVQDLGLTRHLVAGAQLLNIKVLDHVVMGDGGYVSMLERGLMPDEAQEKRRAWSANGGG
G
>Mature_241_residues
MRARGVGGAEESRERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGLVQQEPLALSLRPGVGPVRAA
QALAALELGRRSQRARERRPRLRTPKEIAAYLAPVLGALRREVFHVLCFNARNVLVHDARVAEGTMNTCPVDPREVFAAA
LTSRATSIVLAHNHPSGDPEPSVQDLGLTRHLVAGAQLLNIKVLDHVVMGDGGYVSMLERGLMPDEAQEKRRAWSANGGG
G

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=211, Percent_Identity=36.4928909952607, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI2367100, Length=108, Percent_Identity=42.5925925925926, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788997, Length=113, Percent_Identity=38.9380530973451, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788312, Length=113, Percent_Identity=40.7079646017699, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25617; Mature: 25617

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARGVGGAEESRERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
VQQEPLALSLRPGVGPVRAAQALAALELGRRSQRARERRPRLRTPKEIAAYLAPVLGALR
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
REVFHVLCFNARNVLVHDARVAEGTMNTCPVDPREVFAAALTSRATSIVLAHNHPSGDPE
HHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCC
PSVQDLGLTRHLVAGAQLLNIKVLDHVVMGDGGYVSMLERGLMPDEAQEKRRAWSANGGG
CCHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCC
G
C
>Mature Secondary Structure
MRARGVGGAEESRERLFRLGAAALTDPELLCVVWSSGPRAPGAWAVAGALLSEGGGLKGL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
VQQEPLALSLRPGVGPVRAAQALAALELGRRSQRARERRPRLRTPKEIAAYLAPVLGALR
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
REVFHVLCFNARNVLVHDARVAEGTMNTCPVDPREVFAAALTSRATSIVLAHNHPSGDPE
HHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCC
PSVQDLGLTRHLVAGAQLLNIKVLDHVVMGDGGYVSMLERGLMPDEAQEKRRAWSANGGG
CCHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA