| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is yusZ [H]
Identifier: 108763612
GI number: 108763612
Start: 883580
End: 884407
Strand: Direct
Name: yusZ [H]
Synonym: MXAN_0774
Alternate gene names: 108763612
Gene position: 883580-884407 (Clockwise)
Preceding gene: 108763210
Following gene: 108756834
Centisome position: 9.67
GC content: 70.17
Gene sequence:
>828_bases ATGTCCGGTTCGCAGGGAAGTGTCGTTCTCATCACCGGTGCGTCGTCCGGCATCGGCAAGGCGTGCGCGGAGCTGCTGAG CGCGCGTGGCCACATCGTCTACGGCACCAGCCGCCGTCCCGTGGAGGCCGCGCCTCCGGGCTACCGGATGCTGGAGCTGG ACGTCACCCAAGACGACTCCGTGCAGCGAGCCGTGGCGACGGTGCTGTCGCGTGAGGGCCGCATCGACGTGGTGGTGAAC AACGCGGGTCATGCGCTCGCGGGCGCCGCCGAGGACACCTCTATCGAGGAAGCGCGCGCGCAGTTGGACGCCAACTTCCT GGGCGCGCTGCGCGTGTGCAAGGCGGTGCTGCCTTCCATGCGCGAGCGGCGCGCCGGCCGCATCATCCAGGTCAGCTCCC TGGGCGGGCAGGTGGGGTTGCCCTTCCAGTCGCTCTACAGCGCCAGCAAGTTCGCCCTGGAGGGCTTCACCGAGGCGCTG CGCCAGGAGGTGGCCGAGTTCGGCATCGAGGCGACGCTGGTGCAGCCCGGAGACGTGCGGACGCAGCTCACCCAGAACCG CGTGTGTGTCGCGAAGGCGGGCGCGGGTTCCGCGTATCGGGAGCGCTTCGAGGCCGTGCTGAAGGCCATCGAGTCCGGCG AACGCGGCGGCCTCGCCGCCGAGGACGTGGCGAAGAAGGTGCTGGAGGTGATGGAGCGCGGAGCGCCTCACGTGCGCTAC CCGGTGGCCCAACTGGCGCAGCGCGTGGCGGTGGTGGCGAAGACCGTGCTGCCCTCACGCACCTTCGAGCAGATTGTCAT GTCCATCTACGGCCTGCGCCGCCGCTGA
Upstream 100 bases:
>100_bases CTGAGTCGCCGGGTACCCCCGTGACGCGGGGTGAGAGGCTCTTGCCGGGCCTCGTGCACCCGTGGTTTGTGCGCCAGGAA GACTGTCGCACGGAGCCTGG
Downstream 100 bases:
>100_bases CCGAGGCTAGAACCGGCCCACCATCGACAGGCCCGTGCCCCCGCGTGGCGTGGTGAGCGGTGCCAGCGCCACCTGGGGCG CGTCCGGGAGGTCGAAGTTC
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MSGSQGSVVLITGASSGIGKACAELLSARGHIVYGTSRRPVEAAPPGYRMLELDVTQDDSVQRAVATVLSREGRIDVVVN NAGHALAGAAEDTSIEEARAQLDANFLGALRVCKAVLPSMRERRAGRIIQVSSLGGQVGLPFQSLYSASKFALEGFTEAL RQEVAEFGIEATLVQPGDVRTQLTQNRVCVAKAGAGSAYRERFEAVLKAIESGERGGLAAEDVAKKVLEVMERGAPHVRY PVAQLAQRVAVVAKTVLPSRTFEQIVMSIYGLRRR
Sequences:
>Translated_275_residues MSGSQGSVVLITGASSGIGKACAELLSARGHIVYGTSRRPVEAAPPGYRMLELDVTQDDSVQRAVATVLSREGRIDVVVN NAGHALAGAAEDTSIEEARAQLDANFLGALRVCKAVLPSMRERRAGRIIQVSSLGGQVGLPFQSLYSASKFALEGFTEAL RQEVAEFGIEATLVQPGDVRTQLTQNRVCVAKAGAGSAYRERFEAVLKAIESGERGGLAAEDVAKKVLEVMERGAPHVRY PVAQLAQRVAVVAKTVLPSRTFEQIVMSIYGLRRR >Mature_274_residues SGSQGSVVLITGASSGIGKACAELLSARGHIVYGTSRRPVEAAPPGYRMLELDVTQDDSVQRAVATVLSREGRIDVVVNN AGHALAGAAEDTSIEEARAQLDANFLGALRVCKAVLPSMRERRAGRIIQVSSLGGQVGLPFQSLYSASKFALEGFTEALR QEVAEFGIEATLVQPGDVRTQLTQNRVCVAKAGAGSAYRERFEAVLKAIESGERGGLAAEDVAKKVLEVMERGAPHVRYP VAQLAQRVAVVAKTVLPSRTFEQIVMSIYGLRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=276, Percent_Identity=30.4347826086957, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=40.4255319148936, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=41.025641025641, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=37.8238341968912, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=33.5051546391753, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=34.7368421052632, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=33.160621761658, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=33.8709677419355, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI59889578, Length=148, Percent_Identity=35.8108108108108, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=31.2169312169312, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI150247226, Length=248, Percent_Identity=29.8387096774194, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI210032112, Length=184, Percent_Identity=32.0652173913043, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI44680136, Length=187, Percent_Identity=29.9465240641711, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI44680133, Length=187, Percent_Identity=29.9465240641711, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI17738292, Length=187, Percent_Identity=29.9465240641711, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI19743808, Length=194, Percent_Identity=32.9896907216495, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI40548397, Length=185, Percent_Identity=30.2702702702703, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI214010158, Length=185, Percent_Identity=30.2702702702703, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI214010156, Length=185, Percent_Identity=30.2702702702703, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI22758144, Length=185, Percent_Identity=30.2702702702703, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=30.2788844621514, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI22507405, Length=245, Percent_Identity=29.3877551020408, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI142976729, Length=196, Percent_Identity=29.0816326530612, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4504503, Length=191, Percent_Identity=30.3664921465969, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI50726952, Length=191, Percent_Identity=33.5078534031414, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI19923817, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=31.9148936170213, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4758504, Length=209, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI38424085, Length=174, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI38348362, Length=174, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI7705855, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=31.1224489795918, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI186928839, Length=204, Percent_Identity=28.4313725490196, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI166795268, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1786701, Length=262, Percent_Identity=31.6793893129771, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=36.3636363636364, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=34.8717948717949, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87082160, Length=188, Percent_Identity=26.5957446808511, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=29.9435028248588, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=31.3829787234043, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=26.5625, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790717, Length=193, Percent_Identity=29.0155440414508, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=28.6516853932584, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115534660, Length=189, Percent_Identity=31.2169312169312, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17557780, Length=240, Percent_Identity=30, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI71997402, Length=270, Percent_Identity=27.7777777777778, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17570069, Length=174, Percent_Identity=31.6091954022989, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17508895, Length=187, Percent_Identity=29.9465240641711, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994604, Length=188, Percent_Identity=30.3191489361702, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=33.6787564766839, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=30.9278350515464, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI32563809, Length=194, Percent_Identity=30.9278350515464, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560220, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17507613, Length=194, Percent_Identity=30.9278350515464, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193204405, Length=192, Percent_Identity=29.6875, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17560332, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=29.8429319371728, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=32.1428571428571, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538486, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI72000259, Length=223, Percent_Identity=28.2511210762332, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17531453, Length=223, Percent_Identity=28.2511210762332, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17559552, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=29.4416243654822, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=208, Percent_Identity=30.2884615384615, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=189, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=224, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6320089, Length=191, Percent_Identity=29.8429319371728, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21358495, Length=272, Percent_Identity=31.6176470588235, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI28571387, Length=258, Percent_Identity=34.1085271317829, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI23397609, Length=186, Percent_Identity=37.0967741935484, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI24651139, Length=189, Percent_Identity=33.8624338624339, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI28571526, Length=195, Percent_Identity=32.3076923076923, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=31.0880829015544, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=33.1632653061224, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24641232, Length=260, Percent_Identity=29.6153846153846, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=31.3829787234043, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=29.5566502463054, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=31.8181818181818, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24580925, Length=225, Percent_Identity=28, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=27.8350515463918, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=196, Percent_Identity=29.5918367346939, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281364892, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648693, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355889, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=31.25, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24640492, Length=230, Percent_Identity=29.1304347826087, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI19922066, Length=301, Percent_Identity=23.5880398671096, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21355319, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=30.5418719211823, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364494, Length=203, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI221510726, Length=127, Percent_Identity=33.0708661417323, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649181, Length=282, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640442, Length=201, Percent_Identity=30.3482587064677, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=30.6878306878307, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=30.8108108108108, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29319; Mature: 29188
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSQGSVVLITGASSGIGKACAELLSARGHIVYGTSRRPVEAAPPGYRMLELDVTQDDS CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCCCHH VQRAVATVLSREGRIDVVVNNAGHALAGAAEDTSIEEARAQLDANFLGALRVCKAVLPSM HHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RERRAGRIIQVSSLGGQVGLPFQSLYSASKFALEGFTEALRQEVAEFGIEATLVQPGDVR HHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH TQLTQNRVCVAKAGAGSAYRERFEAVLKAIESGERGGLAAEDVAKKVLEVMERGAPHVRY HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PVAQLAQRVAVVAKTVLPSRTFEQIVMSIYGLRRR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SGSQGSVVLITGASSGIGKACAELLSARGHIVYGTSRRPVEAAPPGYRMLELDVTQDDS CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCCCHH VQRAVATVLSREGRIDVVVNNAGHALAGAAEDTSIEEARAQLDANFLGALRVCKAVLPSM HHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RERRAGRIIQVSSLGGQVGLPFQSLYSASKFALEGFTEALRQEVAEFGIEATLVQPGDVR HHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH TQLTQNRVCVAKAGAGSAYRERFEAVLKAIESGERGGLAAEDVAKKVLEVMERGAPHVRY HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PVAQLAQRVAVVAKTVLPSRTFEQIVMSIYGLRRR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]