| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108763573
Identifier: 108763573
GI number: 108763573
Start: 4723483
End: 4725063
Strand: Direct
Name: 108763573
Synonym: MXAN_3925
Alternate gene names: NA
Gene position: 4723483-4725063 (Clockwise)
Preceding gene: 108757074
Following gene: 108761376
Centisome position: 51.68
GC content: 69.51
Gene sequence:
>1581_bases TTGACAACCATGAGGCTGTGTATCGTCGGAAGTGGTGTTGCCGCGGTCATCACCGCCCGCGCCGCGCTGGAGCGGGGCTA CGAGGTGGTGATGCTCGAAGCCGGCCCTCGCACGCCCATGCGGGACTCGCGCCGCTGGCTGGACTTCGTCACCACGGGCG TGCGGCCCTACCACGCCTGTGAGGACTCGCAGGGTGACGCCAACTCCCGCCCCGGTGTCCAACCCGAGCGCGACCACTTC CTCATCAAGGGCAGCCGGCTCATGGCGGTGGGCGGGTCGACGCTGCACTGGAGCGGCTGGACGCCCCGCCTCCAGCCCGA GGACCTGGAGCTGCGCAAGCGCACCGGCAAGGGGAACGACTGGCCCTTCAGCTACACCCAGCTCGAGCCCTATTACAGCC AGGCTGAGTCCCTGCTGAACGTCACCGGCCCCAACGCGCCCGTGGACGGACATCCCACGCCCTGGCGCTCGCAGCCCTAC AAGTGGAACAGCCCGCCGTATCCCATCGAGTCGGAGCCGGTGCGCCACGCCTTGAAGGCGCTGGGCATCACCTATGACCA CATTCCCATGTCGCGCAGAGGCCCCGGCGGCGAGGGTGTGGGCGGCCCGTGCATGACGTTTGGCACGTGCCGGTATTGCC CGATGGGCGCGCGCTTCGACCCCACCCTGCTGCTGGCGGACATGGAGTCCCATCCGGGCTTCCGGTTGCTCGCGAGCAGC CCGGTGCTGGCCGTGCGCATGGCGGGAGCGGTGGCCCAGGGCGTCACCTACCGCACCCCCGAGGGCGAGACGGCCACGCT GGACGCGGACGCCGTGCTGGTGGCCGCGGGCGCCCTGGAGACGCCCAAGCTGCTGTGGCACTCGGGCTTCGATGAGCAGC GCCTGCCCGCGCTCGGGCGCTACCTGGTTACCCACCCGATGCTGAAGCTCGAGGGCAAGCTGGCAAAGCCCCCCCGGGAG TTCAACGGGCGCGAAGTCCCCATGCCCGCCCTCTTCTCTCGGCACTTCGACACGCCGGAGCAGCAGGCCGCCGGGAAGAT GATCTTCTCCGAGTACCCGGAGGAGCCGGACCTGCAGTCATGGGTCCGCCAGGAGCAACTGGCGCCCGAGTACATCGCCT CCTTCGCCCGGGAGAGCCGGCTCAACCTCCATGGCTTCATCGAGGAGTTCCCCCAGGCGGAGAACCGCCTGCGCTTCACG GGCAAGCCGGGCGAGCGCCAGGTGGAGATTCACTACGCGGTGGACGCGGGGTTCGCCGCGCGCTGGCAGTGGATGACCGA CACCTTGATGCAGGTGATGAAGACCGCGGGCTGCCGCGAGTCGGAGGTCTGGGTTTCGGGCGTGATTCGCCGGGCGGACC ACTCGGTGGGCACGGCGCGCTTCGGCCAAGGGCCGGACTCGGGCGTCGTGGACGGGAGGCACCTCGTCTTCGGGACGAAG AACCTGTTCGCCCTCACCAACGGCAACTTCCCGAACAACGGCGCCATCAACCCGACGCTGACGCTCACCGCCCTCTCGCT GCGCTTCGCGGACCAGGTGCTGCCGGACCTGGCGCCGACACGAACTACAGCGCGGCCTTGA
Upstream 100 bases:
>100_bases AACATGAATGGCCACATGGGCGGGCTCTGGCACGAGCCGCACGAATCGGGCTCCTATCACGCCTCGGACGAACTGTAGTC AGCGCGGTCGCCGACAGGAT
Downstream 100 bases:
>100_bases GCACGGCCAACGCGACGATGGCCACGACGGCGAACACCTCGCGTCGCGCGGGCGCCTCCTGGATGAAGGCGTTGGCGAAC ACCAGGGAGAAGAGCGTCAC
Product: GMC oxidoreductase
Products: NA
Alternate protein names: GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit [H]
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MTTMRLCIVGSGVAAVITARAALERGYEVVMLEAGPRTPMRDSRRWLDFVTTGVRPYHACEDSQGDANSRPGVQPERDHF LIKGSRLMAVGGSTLHWSGWTPRLQPEDLELRKRTGKGNDWPFSYTQLEPYYSQAESLLNVTGPNAPVDGHPTPWRSQPY KWNSPPYPIESEPVRHALKALGITYDHIPMSRRGPGGEGVGGPCMTFGTCRYCPMGARFDPTLLLADMESHPGFRLLASS PVLAVRMAGAVAQGVTYRTPEGETATLDADAVLVAAGALETPKLLWHSGFDEQRLPALGRYLVTHPMLKLEGKLAKPPRE FNGREVPMPALFSRHFDTPEQQAAGKMIFSEYPEEPDLQSWVRQEQLAPEYIASFARESRLNLHGFIEEFPQAENRLRFT GKPGERQVEIHYAVDAGFAARWQWMTDTLMQVMKTAGCRESEVWVSGVIRRADHSVGTARFGQGPDSGVVDGRHLVFGTK NLFALTNGNFPNNGAINPTLTLTALSLRFADQVLPDLAPTRTTARP
Sequences:
>Translated_526_residues MTTMRLCIVGSGVAAVITARAALERGYEVVMLEAGPRTPMRDSRRWLDFVTTGVRPYHACEDSQGDANSRPGVQPERDHF LIKGSRLMAVGGSTLHWSGWTPRLQPEDLELRKRTGKGNDWPFSYTQLEPYYSQAESLLNVTGPNAPVDGHPTPWRSQPY KWNSPPYPIESEPVRHALKALGITYDHIPMSRRGPGGEGVGGPCMTFGTCRYCPMGARFDPTLLLADMESHPGFRLLASS PVLAVRMAGAVAQGVTYRTPEGETATLDADAVLVAAGALETPKLLWHSGFDEQRLPALGRYLVTHPMLKLEGKLAKPPRE FNGREVPMPALFSRHFDTPEQQAAGKMIFSEYPEEPDLQSWVRQEQLAPEYIASFARESRLNLHGFIEEFPQAENRLRFT GKPGERQVEIHYAVDAGFAARWQWMTDTLMQVMKTAGCRESEVWVSGVIRRADHSVGTARFGQGPDSGVVDGRHLVFGTK NLFALTNGNFPNNGAINPTLTLTALSLRFADQVLPDLAPTRTTARP >Mature_525_residues TTMRLCIVGSGVAAVITARAALERGYEVVMLEAGPRTPMRDSRRWLDFVTTGVRPYHACEDSQGDANSRPGVQPERDHFL IKGSRLMAVGGSTLHWSGWTPRLQPEDLELRKRTGKGNDWPFSYTQLEPYYSQAESLLNVTGPNAPVDGHPTPWRSQPYK WNSPPYPIESEPVRHALKALGITYDHIPMSRRGPGGEGVGGPCMTFGTCRYCPMGARFDPTLLLADMESHPGFRLLASSP VLAVRMAGAVAQGVTYRTPEGETATLDADAVLVAAGALETPKLLWHSGFDEQRLPALGRYLVTHPMLKLEGKLAKPPREF NGREVPMPALFSRHFDTPEQQAAGKMIFSEYPEEPDLQSWVRQEQLAPEYIASFARESRLNLHGFIEEFPQAENRLRFTG KPGERQVEIHYAVDAGFAARWQWMTDTLMQVMKTAGCRESEVWVSGVIRRADHSVGTARFGQGPDSGVVDGRHLVFGTKN LFALTNGNFPNNGAINPTLTLTALSLRFADQVLPDLAPTRTTARP
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase [H]
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 58191; Mature: 58060
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS00221 MIP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTMRLCIVGSGVAAVITARAALERGYEVVMLEAGPRTPMRDSRRWLDFVTTGVRPYHAC CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC EDSQGDANSRPGVQPERDHFLIKGSRLMAVGGSTLHWSGWTPRLQPEDLELRKRTGKGND CCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHHCCCCCC WPFSYTQLEPYYSQAESLLNVTGPNAPVDGHPTPWRSQPYKWNSPPYPIESEPVRHALKA CCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LGITYDHIPMSRRGPGGEGVGGPCMTFGTCRYCPMGARFDPTLLLADMESHPGFRLLASS HCCCEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECC PVLAVRMAGAVAQGVTYRTPEGETATLDADAVLVAAGALETPKLLWHSGFDEQRLPALGR CEEEHHHHHHHHCCCEEECCCCCEEEECCCEEEEECCCCCCCHHHHHCCCCHHHHHHHHH YLVTHPMLKLEGKLAKPPREFNGREVPMPALFSRHFDTPEQQAAGKMIFSEYPEEPDLQS HHHHCCHHEECCCCCCCCHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH WVRQEQLAPEYIASFARESRLNLHGFIEEFPQAENRLRFTGKPGERQVEIHYAVDAGFAA HHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCEEEEEEEEECCCCHH RWQWMTDTLMQVMKTAGCRESEVWVSGVIRRADHSVGTARFGQGPDSGVVDGRHLVFGTK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC NLFALTNGNFPNNGAINPTLTLTALSLRFADQVLPDLAPTRTTARP CEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TTMRLCIVGSGVAAVITARAALERGYEVVMLEAGPRTPMRDSRRWLDFVTTGVRPYHAC CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC EDSQGDANSRPGVQPERDHFLIKGSRLMAVGGSTLHWSGWTPRLQPEDLELRKRTGKGND CCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHHCCCCCC WPFSYTQLEPYYSQAESLLNVTGPNAPVDGHPTPWRSQPYKWNSPPYPIESEPVRHALKA CCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LGITYDHIPMSRRGPGGEGVGGPCMTFGTCRYCPMGARFDPTLLLADMESHPGFRLLASS HCCCEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECC PVLAVRMAGAVAQGVTYRTPEGETATLDADAVLVAAGALETPKLLWHSGFDEQRLPALGR CEEEHHHHHHHHCCCEEECCCCCEEEECCCEEEEECCCCCCCHHHHHCCCCHHHHHHHHH YLVTHPMLKLEGKLAKPPREFNGREVPMPALFSRHFDTPEQQAAGKMIFSEYPEEPDLQS HHHHCCHHEECCCCCCCCHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH WVRQEQLAPEYIASFARESRLNLHGFIEEFPQAENRLRFTGKPGERQVEIHYAVDAGFAA HHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCEEEEEEEEECCCCHH RWQWMTDTLMQVMKTAGCRESEVWVSGVIRRADHSVGTARFGQGPDSGVVDGRHLVFGTK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC NLFALTNGNFPNNGAINPTLTLTALSLRFADQVLPDLAPTRTTARP CEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]