| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is yvrN [H]
Identifier: 108763433
GI number: 108763433
Start: 3235611
End: 3238013
Strand: Reverse
Name: yvrN [H]
Synonym: MXAN_2783
Alternate gene names: 108763433
Gene position: 3238013-3235611 (Counterclockwise)
Preceding gene: 108760768
Following gene: 108759275
Centisome position: 35.43
GC content: 70.95
Gene sequence:
>2403_bases ATGGATTCGCTCCTCCAGGACCTCCGCTACGCGATACGCACGCTGACACGAACCCCCGGCTTCACGCTGGCCGCGGGCCT CACGCTGGCGCTCGTCATTGGGGCGAACGCCGTCCTGTTCAGCGCCATCCACGCGATGCTGCTGCGGCCCCTGCCCTTTC CCCTCCCCGAATCCCTGGTCCGTATCTGGTGCGTGCAGGAGTCGGTGAGCCACGCCTCGGTGGCGGCACCGGAGTTGCTC GGCTGGCGGGAGCATTCGAAGGGCTTCAGCCAGCTCGCGGGCTTCGGACGCACCAGCCTCAACCGGACGGGAACGGACGA GCCCGAGCGGGTGCGGGCGGCGCGCATCACCCCCAACTTCTTCTCCGTGTTGGGGGTGCAACCCGCGCAGGGGCGCGACC TGCGTGAAGAGGACGCGCCGCCCGGGGGTGACACCTCCGTGGTGTTGGTGAGCCATGGCTACTGGCAGCGGGCGCTCGGC GGCGTCCCGGACGTGGTGGGCCAGACGCTGGTGCTCAACGGCCGGAGCCACGCGGTGGTGGGCGTGCTGCCGGAGGACTT CTCGTTCCCCGAGTTCGCCGAGGACACGGATGTGTGGGTCCCCGAGTGGCAGGACCCACAGCGGCATGGCAACCACTACC AGTCGGTGCTGGGACGGTTGGCACCGGGCGTCTCACTGGAGGCGGCCCGAGCGGACCTGGAGCGCGCGGCGCAGGGCATT GGCCACCCCGAGCCAGGGCAGAAGCGCCACACCGTGCGGGTGACGGGCTGGCAGGACCACCTCACGACGAACACGCGAGA TGTGCTGTGGATGCTGTGGGTGGCGGTGGGCTTCGTGCTGCTCATCGCGTGCGCCAACGTGGCCAACCTCATGCTGGTGC GCACGTTGTCCCGGCAGCGGGATGGCGCCATCCGGGCGGCGCTGGGCGCCAGCCAGGGACGGCGGCTCCAGCAGTCCCTG GTGGAGAGCGTGCTGCTGTCCCTCTTCGGCGGCGTGCTGGGGCTCTTGCTGATGCTGTGGGGCATGGAACTGGTGCGCAC CCTGCTGCCCGCCAGCATGCTGCGCGTGGCGCCGCTGGAGCTCAACGGCACCGTCCTGGGCTTCAGCGTGCTGCTGTCGG TGGGCACCGGCCTGCTCTTCGGCCTGGCGCCCGCGATGCATGCGTCGGGGATGAACGTGCTGCCCCTGCTGCGGCAATCC GGCAGCGCCGTGGGCGCGCGCTCCGGGCATCCGCTGCGCAGCGCGCTCGTCATGGTGCAGCTCGCGCTCGCGCTGGTGCT GATGGTGGGCACGGGCCTCATCGTGCGCTCGCTGCAGAACATCCAGGCGGTGGACCCGGGTTTCGACGCGGAGGGGGTCG TCGGCGCGCAATTGACGCTCGCCCCCGACGCGTACCAGGAGGACGCGCGCAAGCGGGCCTTCTTCGAAGGCGTCGCGGAG CGGCTGATGGCGCGGCCCGGCATGGAAGCGGTGGGCTTCGTCAACGATGCCCCGCTGGGAGGCTCGAGCTCGAATGGTGA CTTCATCCTGGAAGGGATGTCGGCCTCGCCCGGTGACCGCCACATCACGGCCTACCGGGTGGCCTCGCCCGGCTACTTCT CCGCGTTGCGCATTGGCGTGCGGCAGGGCCGCGACTTCGGGCCCGAGGACACGGAGAAGAGCGCCCCCGTCATCATCGTC AACGAGGCCTTCGTCCAGAGGTACCTCGGTGGCGGGGATGCCCTGGGCCGGCGGGTGCGGCTGACCTGGAATGACCTGCA GCCGTTCCGGGAAATCATCGGCGTGGTGGAGGACGTCCGTCACGAGTCGCTCACCCAGCCCGCCACGCCCGAAAGCTATC TGCCCTATGCGCAGTTTCCCCTGCGAGCCATGACGATGCTGGTGCGCACCCAGGGGCCGCCCGCCTCGGCGCTGGCCGCG CTGCGCGAAGAGGTGAAGGCGGTGGACGCCCAGCAGCCCGTCTACGACTTGCTGCCCTTCACGGACCGGGTGGAGAAGCT CCTGCTGCGGCCCAGGGCCACGACGCGGCTGCTGGCGGCCTTCGCCGGGCTCGCCGTCATCCTGGCCGGCGTCGGTGTCT ATGGCGTGCTGGCGTATTCGGTGGGCCAGCGGACGCGAGAGCTAGGCATCCGGATGGCGCTGGGGGCCCATCCCCTCCAG GTGCTGCGGCTGGTGCTGAGCCAGGGGCTGTGGTTGACGGCCCTGGGCGTGGGCGTGGGGCTCATCGCCGCGTATGGCGC CACCCGGTTCATGGCGGCGACGCTCTATGGCGTGGAGCCCTTCGCCCCGGACATCTTCCTGGGCGTGGCCGTGGCGCTGG CGGCCCTCTCCCTGCTGGCGTGCCTGGTGCCCGCGCTTCGCGCCAGCCGCGTCTCCCCGTCGGAGTCCCTGCGCGCGGAC TAG
Upstream 100 bases:
>100_bases TCGCGCACCCGCCTGGCTCGCTCAGGGAAGGACACCCTCCGGATGTCCGGCGGTTGCGCCCGCGAGGCGGTTGGCATGTC CTTCGCTCATGGCCGCAGCC
Downstream 100 bases:
>100_bases GGCTCACGCCTGCTTCATCTGGGAAGGCCCCTTGCGCGGGGGGCGGGCATCCGGGCGGCCAGAACGGGCCCGCCGGGGAG CCACTTTCCGCCCCTGTTGG
Product: putative permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 800; Mature: 800
Protein sequence:
>800_residues MDSLLQDLRYAIRTLTRTPGFTLAAGLTLALVIGANAVLFSAIHAMLLRPLPFPLPESLVRIWCVQESVSHASVAAPELL GWREHSKGFSQLAGFGRTSLNRTGTDEPERVRAARITPNFFSVLGVQPAQGRDLREEDAPPGGDTSVVLVSHGYWQRALG GVPDVVGQTLVLNGRSHAVVGVLPEDFSFPEFAEDTDVWVPEWQDPQRHGNHYQSVLGRLAPGVSLEAARADLERAAQGI GHPEPGQKRHTVRVTGWQDHLTTNTRDVLWMLWVAVGFVLLIACANVANLMLVRTLSRQRDGAIRAALGASQGRRLQQSL VESVLLSLFGGVLGLLLMLWGMELVRTLLPASMLRVAPLELNGTVLGFSVLLSVGTGLLFGLAPAMHASGMNVLPLLRQS GSAVGARSGHPLRSALVMVQLALALVLMVGTGLIVRSLQNIQAVDPGFDAEGVVGAQLTLAPDAYQEDARKRAFFEGVAE RLMARPGMEAVGFVNDAPLGGSSSNGDFILEGMSASPGDRHITAYRVASPGYFSALRIGVRQGRDFGPEDTEKSAPVIIV NEAFVQRYLGGGDALGRRVRLTWNDLQPFREIIGVVEDVRHESLTQPATPESYLPYAQFPLRAMTMLVRTQGPPASALAA LREEVKAVDAQQPVYDLLPFTDRVEKLLLRPRATTRLLAAFAGLAVILAGVGVYGVLAYSVGQRTRELGIRMALGAHPLQ VLRLVLSQGLWLTALGVGVGLIAAYGATRFMAATLYGVEPFAPDIFLGVAVALAALSLLACLVPALRASRVSPSESLRAD
Sequences:
>Translated_800_residues MDSLLQDLRYAIRTLTRTPGFTLAAGLTLALVIGANAVLFSAIHAMLLRPLPFPLPESLVRIWCVQESVSHASVAAPELL GWREHSKGFSQLAGFGRTSLNRTGTDEPERVRAARITPNFFSVLGVQPAQGRDLREEDAPPGGDTSVVLVSHGYWQRALG GVPDVVGQTLVLNGRSHAVVGVLPEDFSFPEFAEDTDVWVPEWQDPQRHGNHYQSVLGRLAPGVSLEAARADLERAAQGI GHPEPGQKRHTVRVTGWQDHLTTNTRDVLWMLWVAVGFVLLIACANVANLMLVRTLSRQRDGAIRAALGASQGRRLQQSL VESVLLSLFGGVLGLLLMLWGMELVRTLLPASMLRVAPLELNGTVLGFSVLLSVGTGLLFGLAPAMHASGMNVLPLLRQS GSAVGARSGHPLRSALVMVQLALALVLMVGTGLIVRSLQNIQAVDPGFDAEGVVGAQLTLAPDAYQEDARKRAFFEGVAE RLMARPGMEAVGFVNDAPLGGSSSNGDFILEGMSASPGDRHITAYRVASPGYFSALRIGVRQGRDFGPEDTEKSAPVIIV NEAFVQRYLGGGDALGRRVRLTWNDLQPFREIIGVVEDVRHESLTQPATPESYLPYAQFPLRAMTMLVRTQGPPASALAA LREEVKAVDAQQPVYDLLPFTDRVEKLLLRPRATTRLLAAFAGLAVILAGVGVYGVLAYSVGQRTRELGIRMALGAHPLQ VLRLVLSQGLWLTALGVGVGLIAAYGATRFMAATLYGVEPFAPDIFLGVAVALAALSLLACLVPALRASRVSPSESLRAD >Mature_800_residues MDSLLQDLRYAIRTLTRTPGFTLAAGLTLALVIGANAVLFSAIHAMLLRPLPFPLPESLVRIWCVQESVSHASVAAPELL GWREHSKGFSQLAGFGRTSLNRTGTDEPERVRAARITPNFFSVLGVQPAQGRDLREEDAPPGGDTSVVLVSHGYWQRALG GVPDVVGQTLVLNGRSHAVVGVLPEDFSFPEFAEDTDVWVPEWQDPQRHGNHYQSVLGRLAPGVSLEAARADLERAAQGI GHPEPGQKRHTVRVTGWQDHLTTNTRDVLWMLWVAVGFVLLIACANVANLMLVRTLSRQRDGAIRAALGASQGRRLQQSL VESVLLSLFGGVLGLLLMLWGMELVRTLLPASMLRVAPLELNGTVLGFSVLLSVGTGLLFGLAPAMHASGMNVLPLLRQS GSAVGARSGHPLRSALVMVQLALALVLMVGTGLIVRSLQNIQAVDPGFDAEGVVGAQLTLAPDAYQEDARKRAFFEGVAE RLMARPGMEAVGFVNDAPLGGSSSNGDFILEGMSASPGDRHITAYRVASPGYFSALRIGVRQGRDFGPEDTEKSAPVIIV NEAFVQRYLGGGDALGRRVRLTWNDLQPFREIIGVVEDVRHESLTQPATPESYLPYAQFPLRAMTMLVRTQGPPASALAA LREEVKAVDAQQPVYDLLPFTDRVEKLLLRPRATTRLLAAFAGLAVILAGVGVYGVLAYSVGQRTRELGIRMALGAHPLQ VLRLVLSQGLWLTALGVGVGLIAAYGATRFMAATLYGVEPFAPDIFLGVAVALAALSLLACLVPALRASRVSPSESLRAD
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1787105, Length=290, Percent_Identity=27.2413793103448, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 85748; Mature: 85748
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSLLQDLRYAIRTLTRTPGFTLAAGLTLALVIGANAVLFSAIHAMLLRPLPFPLPESLV CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RIWCVQESVSHASVAAPELLGWREHSKGFSQLAGFGRTSLNRTGTDEPERVRAARITPNF HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHH FSVLGVQPAQGRDLREEDAPPGGDTSVVLVSHGYWQRALGGVPDVVGQTLVLNGRSHAVV HHHHCCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHCCCHHHHCCEEEECCCCCEEE GVLPEDFSFPEFAEDTDVWVPEWQDPQRHGNHYQSVLGRLAPGVSLEAARADLERAAQGI EECCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC GHPEPGQKRHTVRVTGWQDHLTTNTRDVLWMLWVAVGFVLLIACANVANLMLVRTLSRQR CCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DGAIRAALGASQGRRLQQSLVESVLLSLFGGVLGLLLMLWGMELVRTLLPASMLRVAPLE CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE LNGTVLGFSVLLSVGTGLLFGLAPAMHASGMNVLPLLRQSGSAVGARSGHPLRSALVMVQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH LALALVLMVGTGLIVRSLQNIQAVDPGFDAEGVVGAQLTLAPDAYQEDARKRAFFEGVAE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH RLMARPGMEAVGFVNDAPLGGSSSNGDFILEGMSASPGDRHITAYRVASPGYFSALRIGV HHHHCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHH RQGRDFGPEDTEKSAPVIIVNEAFVQRYLGGGDALGRRVRLTWNDLQPFREIIGVVEDVR HCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHH HESLTQPATPESYLPYAQFPLRAMTMLVRTQGPPASALAALREEVKAVDAQQPVYDLLPF HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCH TDRVEKLLLRPRATTRLLAAFAGLAVILAGVGVYGVLAYSVGQRTRELGIRMALGAHPLQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH VLRLVLSQGLWLTALGVGVGLIAAYGATRFMAATLYGVEPFAPDIFLGVAVALAALSLLA HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH CLVPALRASRVSPSESLRAD HHHHHHHHCCCCCCHHCCCC >Mature Secondary Structure MDSLLQDLRYAIRTLTRTPGFTLAAGLTLALVIGANAVLFSAIHAMLLRPLPFPLPESLV CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RIWCVQESVSHASVAAPELLGWREHSKGFSQLAGFGRTSLNRTGTDEPERVRAARITPNF HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHH FSVLGVQPAQGRDLREEDAPPGGDTSVVLVSHGYWQRALGGVPDVVGQTLVLNGRSHAVV HHHHCCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHCCCHHHHCCEEEECCCCCEEE GVLPEDFSFPEFAEDTDVWVPEWQDPQRHGNHYQSVLGRLAPGVSLEAARADLERAAQGI EECCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC GHPEPGQKRHTVRVTGWQDHLTTNTRDVLWMLWVAVGFVLLIACANVANLMLVRTLSRQR CCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DGAIRAALGASQGRRLQQSLVESVLLSLFGGVLGLLLMLWGMELVRTLLPASMLRVAPLE CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE LNGTVLGFSVLLSVGTGLLFGLAPAMHASGMNVLPLLRQSGSAVGARSGHPLRSALVMVQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH LALALVLMVGTGLIVRSLQNIQAVDPGFDAEGVVGAQLTLAPDAYQEDARKRAFFEGVAE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH RLMARPGMEAVGFVNDAPLGGSSSNGDFILEGMSASPGDRHITAYRVASPGYFSALRIGV HHHHCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHH RQGRDFGPEDTEKSAPVIIVNEAFVQRYLGGGDALGRRVRLTWNDLQPFREIIGVVEDVR HCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCHHCCCEEEEEHHHHHHHHHHHHHHHHHH HESLTQPATPESYLPYAQFPLRAMTMLVRTQGPPASALAALREEVKAVDAQQPVYDLLPF HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCH TDRVEKLLLRPRATTRLLAAFAGLAVILAGVGVYGVLAYSVGQRTRELGIRMALGAHPLQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH VLRLVLSQGLWLTALGVGVGLIAAYGATRFMAATLYGVEPFAPDIFLGVAVALAALSLLA HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH CLVPALRASRVSPSESLRAD HHHHHHHHCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 10568751; 3145906 [H]