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The map label for this gene is dfrA

Identifier: 108763061

GI number: 108763061

Start: 3754903

End: 3755298

Strand: Direct

Name: dfrA

Synonym: MXAN_3205

Alternate gene names: 108763061

Gene position: 3754903-3755298 (Clockwise)

Preceding gene: 108762300

Following gene: 108762960

Centisome position: 41.08

GC content: 67.68

Gene sequence:

>396_bases
GTGCGCCGCATGGCTCGCAAGGCAATCCACTCCGACCAGGCCCCCAAGGCCATTGGCCCGTATTCCCAGGCGGTGCAGGT
GGACGCCGGGAAGATGACCTTCCTCTCCGGCCAGATTCCGCTCGACCCCGCCACCATGGAGATGGTGCAGGGCGACGTCG
TCGCGCAGGCGGAGCGGGTGATGGAGAATCTGAAGGCCGTGCTCGCCGCCAGCGGGCTGGACTTCTCCCACGTCGTGCGC
TGCACCATCTTCCTCACCGATTTGGGCGACTTCGCCCGGGTGAACGAAGTCTATGGCCGCTACTTCACCGGCGCTCCGCC
GGCCCGCGCCACCGTGCAGGTGTCCGCGCTGCCGCGTGGCTCCAAGGTGGAGATTGACGCCATCGCCGTCTCCTGA

Upstream 100 bases:

>100_bases
CAGGGCGTCTACTCGGTCGAGCGCATCTAACCGCCTTCGCCTTTCGTGGTAGAGCGCCCGGAAACCCCGGCGGCCCGATT
CGGGCCGCTCTCACCCCGAG

Downstream 100 bases:

>100_bases
AGCAAGGGCTGGAAAGACGAAGGCCGCCGGACTCAGAGGAGTCCGACGGCCTTTGTCGCGTCAGGGCGCCAGGGCCCCAG
CGGGAACTACTTCGAGTCGG

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVR
CTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAIAVS

Sequences:

>Translated_131_residues
MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVR
CTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAIAVS
>Mature_131_residues
MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVR
CTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAIAVS

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=130, Percent_Identity=46.1538461538462, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=47.65625, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=48.0314960629921, Blast_Score=113, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=130, Percent_Identity=49.2307692307692, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71982068, Length=130, Percent_Identity=49.2307692307692, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI25148896, Length=130, Percent_Identity=49.2307692307692, Blast_Score=127, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=45, Blast_Score=94, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=37.7049180327869, Blast_Score=91, Evalue=6e-20,
Organism=Drosophila melanogaster, GI19921376, Length=131, Percent_Identity=42.7480916030534, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DFRA_MYXXA (O52178)

Other databases:

- EMBL:   AF025847
- ProteinModelPortal:   O52178
- SMR:   O52178
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR00004

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 14064; Mature: 14064

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERV
CCHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHH
MENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRG
HHHHHHHHHHCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
SKVEIDAIAVS
CCEEEEEEEEC
>Mature Secondary Structure
MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERV
CCHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHH
MENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRG
HHHHHHHHHHCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
SKVEIDAIAVS
CCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA