| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is macB [H]
Identifier: 108763012
GI number: 108763012
Start: 5124436
End: 5125674
Strand: Reverse
Name: macB [H]
Synonym: MXAN_4173
Alternate gene names: 108763012
Gene position: 5125674-5124436 (Counterclockwise)
Preceding gene: 108756984
Following gene: 108760958
Centisome position: 56.08
GC content: 67.31
Gene sequence:
>1239_bases ATGAGCCAGCGGTCCGCCTTCCGCGTGGATGTGCTGGAGGGCGCACGCATCGCGGTCTTCTCCCTGAAGGCCAACCGCCT GCGCACGGTGCTGACCACCCTGGGCATTGGCATCGGCGTGGCCACGCTGCTGGCCATCGTCGGCATCATCCAGGGGCTCA ACACGTCCTTCCACAAGCAGTTGGCCACCTTCGGGGCGAACACGATGTACGTGTCCAAGTGGCCCTGGATGATCAAGGGC GACTGGTGGAAGTACCGCAACCGGAAGAACTTCACCCTGGAGCAGATGCAGCGGCTGCGCACGCTGGCGCCCTTCGTGAC GGCCATGTCCCCGGCGGTGTCTCGCCTGTCGGACGTGGCGCATGGCGGCGAGCAGATGTCCACCGTGCGCATCCAGGGCG TGACGCACGAGTACCTCAACATCTCTGGCTACGAAATCACCGGCGGGCGCTTCCTCACCGAGGCGGACGACGCGACGACG CGGCCGGTGGCGGTGGTGGGCGCGGACGTGGTGGACGGGCTCTTCCCGGGCGTCAGTCCGGTGGGGCAGTCGATTCGCAT CGACAACCGCACCTTCCAGGTGGTGGGCACGCTCAGCCGCAAGGGGAAGATGGTGGGGGAGAGCATGGACCTGCTCGTCT TCATCCCCTTCAAGACGTTCTATTCGAGCTTCGGCAAGGGCCGCAGTTTCGAGATTGCCATGGCGGTGGAGGATGCCTCG CAGATGCGGTCCGCGGAGGACCAGCTCACCGGCATCATGCGGCGCGTGCGCTCCACGCCTCCGGGGGCGGAGGACGACTT CTCCATCAACCGGCCAGAGGCCATGGCGCAGACATACGAGCAGCTCACGGGCGCGTTGTACGGCGTGGCCGTGGGCGTGG GGCTCATCACGTTGCTGGTGGGCGGTATCGGCATCATGAACATCATGCTGGTGTCGGTGCGCGAGCGGACGCGGGAGATT GGCGTGCGGCGTGCGCTGGGCGCCCGGAAACGGACCATCGTCTTCCAGTTCCTGATGGAAGCCTCGAGCGTGTCCGCGGT GGGAGGCCTGCTGGGGACGACCGTGGGATTGGGCACGGCCAAGGTGGTGTCGCTCATCACGCCGCTCGCGGCGGACGTGC AGCCGATGACCGTGGTGGCGGGGGTGGGCTTCGCCGCGCTGGTGGGCCTGCTGTTCGGCATCTGGCCGGCGGCGCGCGCG GCGAACCTGGACCCCGTGGAAGCCCTTCGTTACGAGTAG
Upstream 100 bases:
>100_bases CCCGGGCCATCCGCCTGAGCGACGGAGAGATTGTCGCGGACGGTGACGGCCGCACGGTGGCCATGGGAACGGCGACGGAC GTACTGAACGCGGGGGGCGC
Downstream 100 bases:
>100_bases CGCGATGCGAGCGTTCCTGGACAATTTGCGGTTGGCGTTGGGCACCTTCCTGGGCAACCCGCTGCGCTCGCTGTTGACGC TGCTGGGCATCGTCATTGGC
Product: putative ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSQRSAFRVDVLEGARIAVFSLKANRLRTVLTTLGIGIGVATLLAIVGIIQGLNTSFHKQLATFGANTMYVSKWPWMIKG DWWKYRNRKNFTLEQMQRLRTLAPFVTAMSPAVSRLSDVAHGGEQMSTVRIQGVTHEYLNISGYEITGGRFLTEADDATT RPVAVVGADVVDGLFPGVSPVGQSIRIDNRTFQVVGTLSRKGKMVGESMDLLVFIPFKTFYSSFGKGRSFEIAMAVEDAS QMRSAEDQLTGIMRRVRSTPPGAEDDFSINRPEAMAQTYEQLTGALYGVAVGVGLITLLVGGIGIMNIMLVSVRERTREI GVRRALGARKRTIVFQFLMEASSVSAVGGLLGTTVGLGTAKVVSLITPLAADVQPMTVVAGVGFAALVGLLFGIWPAARA ANLDPVEALRYE
Sequences:
>Translated_412_residues MSQRSAFRVDVLEGARIAVFSLKANRLRTVLTTLGIGIGVATLLAIVGIIQGLNTSFHKQLATFGANTMYVSKWPWMIKG DWWKYRNRKNFTLEQMQRLRTLAPFVTAMSPAVSRLSDVAHGGEQMSTVRIQGVTHEYLNISGYEITGGRFLTEADDATT RPVAVVGADVVDGLFPGVSPVGQSIRIDNRTFQVVGTLSRKGKMVGESMDLLVFIPFKTFYSSFGKGRSFEIAMAVEDAS QMRSAEDQLTGIMRRVRSTPPGAEDDFSINRPEAMAQTYEQLTGALYGVAVGVGLITLLVGGIGIMNIMLVSVRERTREI GVRRALGARKRTIVFQFLMEASSVSAVGGLLGTTVGLGTAKVVSLITPLAADVQPMTVVAGVGFAALVGLLFGIWPAARA ANLDPVEALRYE >Mature_411_residues SQRSAFRVDVLEGARIAVFSLKANRLRTVLTTLGIGIGVATLLAIVGIIQGLNTSFHKQLATFGANTMYVSKWPWMIKGD WWKYRNRKNFTLEQMQRLRTLAPFVTAMSPAVSRLSDVAHGGEQMSTVRIQGVTHEYLNISGYEITGGRFLTEADDATTR PVAVVGADVVDGLFPGVSPVGQSIRIDNRTFQVVGTLSRKGKMVGESMDLLVFIPFKTFYSSFGKGRSFEIAMAVEDASQ MRSAEDQLTGIMRRVRSTPPGAEDDFSINRPEAMAQTYEQLTGALYGVAVGVGLITLLVGGIGIMNIMLVSVRERTREIG VRRALGARKRTIVFQFLMEASSVSAVGGLLGTTVGLGTAKVVSLITPLAADVQPMTVVAGVGFAALVGLLFGIWPAARAA NLDPVEALRYE
Specific function: Part of the ABC transporter complex MacAB involved in macrolide export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation [H]
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI1787105, Length=403, Percent_Identity=33.2506203473945, Blast_Score=155, Evalue=6e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017911 - InterPro: IPR003593 - InterPro: IPR003838 [H]
Pfam domain/function: PF00005 ABC_tran; PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 44487; Mature: 44356
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRSAFRVDVLEGARIAVFSLKANRLRTVLTTLGIGIGVATLLAIVGIIQGLNTSFHKQ CCCCCCEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LATFGANTMYVSKWPWMIKGDWWKYRNRKNFTLEQMQRLRTLAPFVTAMSPAVSRLSDVA HHHHCCCEEEEECCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGGEQMSTVRIQGVTHEYLNISGYEITGGRFLTEADDATTRPVAVVGADVVDGLFPGVSP CCCCCEEEEEEECCEEHHCCCCCEEEECCEEEECCCCCCCCCEEEECHHHHHHHCCCCCC VGQSIRIDNRTFQVVGTLSRKGKMVGESMDLLVFIPFKTFYSSFGKGRSFEIAMAVEDAS CCCCEEECCCEEEEEEEHHHCCCCCCCCCCEEEEEEHHHHHHHHCCCCCEEEEEEEHHHH QMRSAEDQLTGIMRRVRSTPPGAEDDFSINRPEAMAQTYEQLTGALYGVAVGVGLITLLV HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGIGIMNIMLVSVRERTREIGVRRALGARKRTIVFQFLMEASSVSAVGGLLGTTVGLGTA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH KVVSLITPLAADVQPMTVVAGVGFAALVGLLFGIWPAARAANLDPVEALRYE HHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC >Mature Secondary Structure SQRSAFRVDVLEGARIAVFSLKANRLRTVLTTLGIGIGVATLLAIVGIIQGLNTSFHKQ CCCCCEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LATFGANTMYVSKWPWMIKGDWWKYRNRKNFTLEQMQRLRTLAPFVTAMSPAVSRLSDVA HHHHCCCEEEEECCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGGEQMSTVRIQGVTHEYLNISGYEITGGRFLTEADDATTRPVAVVGADVVDGLFPGVSP CCCCCEEEEEEECCEEHHCCCCCEEEECCEEEECCCCCCCCCEEEECHHHHHHHCCCCCC VGQSIRIDNRTFQVVGTLSRKGKMVGESMDLLVFIPFKTFYSSFGKGRSFEIAMAVEDAS CCCCEEECCCEEEEEEEHHHCCCCCCCCCCEEEEEEHHHHHHHHCCCCCEEEEEEEHHHH QMRSAEDQLTGIMRRVRSTPPGAEDDFSINRPEAMAQTYEQLTGALYGVAVGVGLITLLV HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGIGIMNIMLVSVRERTREIGVRRALGARKRTIVFQFLMEASSVSAVGGLLGTTVGLGTA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH KVVSLITPLAADVQPMTVVAGVGFAALVGLLFGIWPAARAANLDPVEALRYE HHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA