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The map label for this gene is rpoH [H]

Identifier: 108762696

GI number: 108762696

Start: 894474

End: 895295

Strand: Direct

Name: rpoH [H]

Synonym: MXAN_0785

Alternate gene names: 108762696

Gene position: 894474-895295 (Clockwise)

Preceding gene: 108756834

Following gene: 108759681

Centisome position: 9.79

GC content: 70.92

Gene sequence:

>822_bases
GTGGGCGCGCCCAACCGGAGGAGGTCCATGGAAGCCATCAACCTGAACGTGTCCTTTGAATCCCCTGAGCTCGTGGTTCC
GGCTGAGGTCGCTGAAGCGCGCGTCCGTGAGCACCTGAAGTTGGTGCGGCGGTTGGCGTGGAAGTACCGGTGGACCGGCC
TGTCGATGGAAGAGCTGGTGGCGGAAGGCAACGTTGGGTTGATGGAAGCCGCGGGACGTTTCGAGGAACGCGGGGTGCCG
TTCGCGGCCTATGCCAGCCAGTGGATCCGTGCGCGCATCCGCGCCTACGTGGGCCGCAACTGGAGCATGGCGGGCGGCCG
GGCGCCGTGGGTGGTGTTCCAGCTCCGGAGGGAGCGGTCGCGGCTGGAGGCCCGGTGGGGGGAGGGTCACCCGGAGGTGG
AGAAGCGCCTCGCCGAGGCCTTGGGGAAGCGGGAGGACGAGGTGGCCCTCGCCATGGAGGCGCTGTCGCGGGACGTGTCG
CTGGACGCGCCGGTGTCTCCGGACTCGGAGGCCACGCGGCTGGAGGGGCTGATGGCGGATGCCGACTCGCAGGAGGACCA
GGTGGACCGGGCGAAGTGGGCGCGGCGGCTCCGGGCGAGCGTGGACGCGGCCTGGCCGGAGCTGGATGCCCGGGAGCGTG
CGCTGGTGGAAGAGCGGATGCTTGCGGAGGATGGGGTGAGCGCGGAGCTGCTGGCACGCCGCTTCGGGGTGACGGCGGTG
CGTATCCGGCAGATCGAACAGGGCCTGCGGGTGAAGCTGCGCCACAGGCTGACGGCCGGTCTCACGTCCTGGGACGGGGA
GGCGATGTCCCTGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCCAGCTCATATCCATAGAGATAGTCGAAGTGTTGTCGTTAAACTACCTAATTTTCTTATAGAGCCCCGGCCTTTAATTT
CCTCTGCGTCGCGCCGCCGT

Downstream 100 bases:

>100_bases
CGCCTGCCTGCCCAGGTGGCGGAGAATGCTGTTGACGGAGGAGGGAGGGGCTCGCTATGAAGGCGCCGTTCCGCGCGGTG
CCTCTTACGCCCAGGTAGCT

Product: RNA polymerase sigma-32 factor family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MGAPNRRRSMEAINLNVSFESPELVVPAEVAEARVREHLKLVRRLAWKYRWTGLSMEELVAEGNVGLMEAAGRFEERGVP
FAAYASQWIRARIRAYVGRNWSMAGGRAPWVVFQLRRERSRLEARWGEGHPEVEKRLAEALGKREDEVALAMEALSRDVS
LDAPVSPDSEATRLEGLMADADSQEDQVDRAKWARRLRASVDAAWPELDARERALVEERMLAEDGVSAELLARRFGVTAV
RIRQIEQGLRVKLRHRLTAGLTSWDGEAMSLAA

Sequences:

>Translated_273_residues
MGAPNRRRSMEAINLNVSFESPELVVPAEVAEARVREHLKLVRRLAWKYRWTGLSMEELVAEGNVGLMEAAGRFEERGVP
FAAYASQWIRARIRAYVGRNWSMAGGRAPWVVFQLRRERSRLEARWGEGHPEVEKRLAEALGKREDEVALAMEALSRDVS
LDAPVSPDSEATRLEGLMADADSQEDQVDRAKWARRLRASVDAAWPELDARERALVEERMLAEDGVSAELLARRFGVTAV
RIRQIEQGLRVKLRHRLTAGLTSWDGEAMSLAA
>Mature_272_residues
GAPNRRRSMEAINLNVSFESPELVVPAEVAEARVREHLKLVRRLAWKYRWTGLSMEELVAEGNVGLMEAAGRFEERGVPF
AAYASQWIRARIRAYVGRNWSMAGGRAPWVVFQLRRERSRLEARWGEGHPEVEKRLAEALGKREDEVALAMEALSRDVSL
DAPVSPDSEATRLEGLMADADSQEDQVDRAKWARRLRASVDAAWPELDARERALVEERMLAEDGVSAELLARRFGVTAVR
IRQIEQGLRVKLRHRLTAGLTSWDGEAMSLAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=237, Percent_Identity=33.7552742616034, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789098, Length=236, Percent_Identity=32.2033898305085, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789448, Length=229, Percent_Identity=31.4410480349345, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30796; Mature: 30665

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAPNRRRSMEAINLNVSFESPELVVPAEVAEARVREHLKLVRRLAWKYRWTGLSMEELV
CCCCCCCCCCEEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AEGNVGLMEAAGRFEERGVPFAAYASQWIRARIRAYVGRNWSMAGGRAPWVVFQLRRERS
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RLEARWGEGHPEVEKRLAEALGKREDEVALAMEALSRDVSLDAPVSPDSEATRLEGLMAD
HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
ADSQEDQVDRAKWARRLRASVDAAWPELDARERALVEERMLAEDGVSAELLARRFGVTAV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
RIRQIEQGLRVKLRHRLTAGLTSWDGEAMSLAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
>Mature Secondary Structure 
GAPNRRRSMEAINLNVSFESPELVVPAEVAEARVREHLKLVRRLAWKYRWTGLSMEELV
CCCCCCCCCEEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AEGNVGLMEAAGRFEERGVPFAAYASQWIRARIRAYVGRNWSMAGGRAPWVVFQLRRERS
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RLEARWGEGHPEVEKRLAEALGKREDEVALAMEALSRDVSLDAPVSPDSEATRLEGLMAD
HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
ADSQEDQVDRAKWARRLRASVDAAWPELDARERALVEERMLAEDGVSAELLARRFGVTAV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
RIRQIEQGLRVKLRHRLTAGLTSWDGEAMSLAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606166 [H]