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The map label for this gene is soxB [H]

Identifier: 108762486

GI number: 108762486

Start: 4826829

End: 4828346

Strand: Direct

Name: soxB [H]

Synonym: MXAN_3963

Alternate gene names: 108762486

Gene position: 4826829-4828346 (Clockwise)

Preceding gene: 108760497

Following gene: 108757346

Centisome position: 52.81

GC content: 69.76

Gene sequence:

>1518_bases
ATGAGCAAGGCGATGATCTGCTCCTGTGAGGACGTCACCGTCGACGACATCCGTCACGCGGTGTCCCGGGGCTTCTGCGA
CGTGGAGTCGGTGAAGCGCTACACCGGCTTCGGCACCGGCATCTGCCAGGGCAAGAGCTGCACGGCGGCGGTGGCCGCGC
TGCTGGAGAAGGAGAAGGCGCTCAAGCCCGCGGCCGTGGTGCCCTTCACGCCGCGCCCGCCGCTCTACCCCACCGAGCTG
CGGATGATGGCCTCCGCGCCCGTGGACGAGTCCCAGCCGCCTGTGGGCGGGCTGCCGCAGGAAGTGGACGCCTTCCCCGC
CGCGCTGCGCCCGGAGGGCCCGGTGCCCGCGAAGGCGAAGGTGGTCATCATCGGCGGCGGCATCATGGGCCTGGCGCTGG
CGTACAACCTGGCGCGCGCCGGTGAGACGGACGTGGTGGTGCTGGAGCGCGGCTACCTGTGCGCGGGCGCGTCCGGCCGC
AACGGCGGCGGCGTGCGCATGCAGTGGGGCACGCCCTCGCTGGTGGAGCTGGCCAAGCGCTCCATCGAGCTGATGAAGGG
CTTCGCGCGCGAGCTGGGCATCAACGTCTGGCTGCGCCAGGGAGGCTACATCTTCCTGGCGAAGACAGCGCCGGTGGCCC
AGCGGCTGGAGCGCAACGTCTCGCTGCACAACCGCTTCGGCGTCCCTACCCGGCTCATCACCCCCGACGAGGCACGCGGC
ATCGTCCCCGGGCTCACGATGAAGGACTGCCTCATCGCGTCCTACAATCCCGAGGACGGCGTCATCTTCCCCTGGCCCTT
CCTGTGGGGCTACGCGCAGGGCTGCCAGAAGCGCGGCGTCCGCGTGGAGACGTACACGGACGTCACCGGCTTCGAGACCA
GCGGCGGCCAGGTGCGCAAGGTGAAGACGACGCGCGGGGACATCGCCTGCGACACCGTGGTGCTGGCCGCCGGCGCCTGG
AGTCCGCAGGTGGCGAAGCTGGCGGACGTGAAGCTGCCCAACGAGCCGCACCGCCACGAAATCCTCAGCACCGAGCCGCT
GAAGCCCTTCCTGGGGCCGCTGGTGTCCGTGCTCGACAGCGGGCTGTACTTCAGCCAGTCCATGCGCGGCGAAATCGTGG
GCGGCATGGGCGACGCCAAGGAGCCCGCGGGCCTCAACATGGGCAGCACCCTGCGCTTCGTGTCGCGCTTCGCGCAGGCG
CTGATGGAGCAGTTGCCCGAGGTGGGCCATGTGAAGGTGCTGCGTCAGTGGGCCGGCTGCTACGACGTGACGCCGGACAA
CAACCCGATTCTGGGACGCACCCCGGGACTGGACAACCTGCTCCAGATGTCCGGCTTCGTGGGCCACGGCTTCATGATGG
CCCCCGCCGTCGCGGAGCGGATGGCGAAATGGATGGCCACCGGCGAGTCCGACGAGCTCTTCACCCGCTTCAACCTCCGA
CGCTACTCTGACGCGGCGGGCCATTCGCGTGACTTCGGCACCGGAACGCTGGAGCGCGAGGACATGGTCATCGGCTGA

Upstream 100 bases:

>100_bases
CGGACGTGTACGCCGCGGGTGACGTCACGGGCGGAGGCACCGCGAAGGACGCGGCGGCGGCCGGACGGCGCGCGGCCCAG
GCGCTGGTGGGAGGGCTGTC

Downstream 100 bases:

>100_bases
GCCCCTGGCCACGCCGTTCCCGGGCCGCGCCTGGACCCCGCCTCCACCGGGTCCGGACGCGGCCCTTGTATTTTTCCGGA
GCCTGTCCTGGCCGGAGACA

Product: sarcosine oxidase subunit beta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSKAMICSCEDVTVDDIRHAVSRGFCDVESVKRYTGFGTGICQGKSCTAAVAALLEKEKALKPAAVVPFTPRPPLYPTEL
RMMASAPVDESQPPVGGLPQEVDAFPAALRPEGPVPAKAKVVIIGGGIMGLALAYNLARAGETDVVVLERGYLCAGASGR
NGGGVRMQWGTPSLVELAKRSIELMKGFARELGINVWLRQGGYIFLAKTAPVAQRLERNVSLHNRFGVPTRLITPDEARG
IVPGLTMKDCLIASYNPEDGVIFPWPFLWGYAQGCQKRGVRVETYTDVTGFETSGGQVRKVKTTRGDIACDTVVLAAGAW
SPQVAKLADVKLPNEPHRHEILSTEPLKPFLGPLVSVLDSGLYFSQSMRGEIVGGMGDAKEPAGLNMGSTLRFVSRFAQA
LMEQLPEVGHVKVLRQWAGCYDVTPDNNPILGRTPGLDNLLQMSGFVGHGFMMAPAVAERMAKWMATGESDELFTRFNLR
RYSDAAGHSRDFGTGTLEREDMVIG

Sequences:

>Translated_505_residues
MSKAMICSCEDVTVDDIRHAVSRGFCDVESVKRYTGFGTGICQGKSCTAAVAALLEKEKALKPAAVVPFTPRPPLYPTEL
RMMASAPVDESQPPVGGLPQEVDAFPAALRPEGPVPAKAKVVIIGGGIMGLALAYNLARAGETDVVVLERGYLCAGASGR
NGGGVRMQWGTPSLVELAKRSIELMKGFARELGINVWLRQGGYIFLAKTAPVAQRLERNVSLHNRFGVPTRLITPDEARG
IVPGLTMKDCLIASYNPEDGVIFPWPFLWGYAQGCQKRGVRVETYTDVTGFETSGGQVRKVKTTRGDIACDTVVLAAGAW
SPQVAKLADVKLPNEPHRHEILSTEPLKPFLGPLVSVLDSGLYFSQSMRGEIVGGMGDAKEPAGLNMGSTLRFVSRFAQA
LMEQLPEVGHVKVLRQWAGCYDVTPDNNPILGRTPGLDNLLQMSGFVGHGFMMAPAVAERMAKWMATGESDELFTRFNLR
RYSDAAGHSRDFGTGTLEREDMVIG
>Mature_504_residues
SKAMICSCEDVTVDDIRHAVSRGFCDVESVKRYTGFGTGICQGKSCTAAVAALLEKEKALKPAAVVPFTPRPPLYPTELR
MMASAPVDESQPPVGGLPQEVDAFPAALRPEGPVPAKAKVVIIGGGIMGLALAYNLARAGETDVVVLERGYLCAGASGRN
GGGVRMQWGTPSLVELAKRSIELMKGFARELGINVWLRQGGYIFLAKTAPVAQRLERNVSLHNRFGVPTRLITPDEARGI
VPGLTMKDCLIASYNPEDGVIFPWPFLWGYAQGCQKRGVRVETYTDVTGFETSGGQVRKVKTTRGDIACDTVVLAAGAWS
PQVAKLADVKLPNEPHRHEILSTEPLKPFLGPLVSVLDSGLYFSQSMRGEIVGGMGDAKEPAGLNMGSTLRFVSRFAQAL
MEQLPEVGHVKVLRQWAGCYDVTPDNNPILGRTPGLDNLLQMSGFVGHGFMMAPAVAERMAKWMATGESDELFTRFNLRR
YSDAAGHSRDFGTGTLEREDMVIG

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI194306651, Length=393, Percent_Identity=26.7175572519084, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI197927446, Length=448, Percent_Identity=26.1160714285714, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI21361378, Length=448, Percent_Identity=26.1160714285714, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI24797151, Length=385, Percent_Identity=26.7532467532467, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI8923708, Length=393, Percent_Identity=28.7531806615776, Blast_Score=112, Evalue=9e-25,
Organism=Escherichia coli, GI1787438, Length=431, Percent_Identity=22.969837587007, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI20130091, Length=410, Percent_Identity=25.609756097561, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI20129729, Length=408, Percent_Identity=29.9019607843137, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI28571104, Length=358, Percent_Identity=27.3743016759777, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17985989, Length=386, Percent_Identity=24.8704663212435, Blast_Score=79, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 54486; Mature: 54354

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAMICSCEDVTVDDIRHAVSRGFCDVESVKRYTGFGTGICQGKSCTAAVAALLEKEKA
CCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
LKPAAVVPFTPRPPLYPTELRMMASAPVDESQPPVGGLPQEVDAFPAALRPEGPVPAKAK
CCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEE
VVIIGGGIMGLALAYNLARAGETDVVVLERGYLCAGASGRNGGGVRMQWGTPSLVELAKR
EEEECCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCEEEECCCCHHHHHHHH
SIELMKGFARELGINVWLRQGGYIFLAKTAPVAQRLERNVSLHNRFGVPTRLITPDEARG
HHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHCCCHHHCCCCCEEEECCCCCCC
IVPGLTMKDCLIASYNPEDGVIFPWPFLWGYAQGCQKRGVRVETYTDVTGFETSGGQVRK
CCCCCCHHHHEEECCCCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCEECCCCEEEE
VKTTRGDIACDTVVLAAGAWSPQVAKLADVKLPNEPHRHEILSTEPLKPFLGPLVSVLDS
EECCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHC
GLYFSQSMRGEIVGGMGDAKEPAGLNMGSTLRFVSRFAQALMEQLPEVGHVKVLRQWAGC
CHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCE
YDVTPDNNPILGRTPGLDNLLQMSGFVGHGFMMAPAVAERMAKWMATGESDELFTRFNLR
ECCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RYSDAAGHSRDFGTGTLEREDMVIG
HHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKAMICSCEDVTVDDIRHAVSRGFCDVESVKRYTGFGTGICQGKSCTAAVAALLEKEKA
CCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
LKPAAVVPFTPRPPLYPTELRMMASAPVDESQPPVGGLPQEVDAFPAALRPEGPVPAKAK
CCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEE
VVIIGGGIMGLALAYNLARAGETDVVVLERGYLCAGASGRNGGGVRMQWGTPSLVELAKR
EEEECCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCEEEECCCCHHHHHHHH
SIELMKGFARELGINVWLRQGGYIFLAKTAPVAQRLERNVSLHNRFGVPTRLITPDEARG
HHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHCCCHHHCCCCCEEEECCCCCCC
IVPGLTMKDCLIASYNPEDGVIFPWPFLWGYAQGCQKRGVRVETYTDVTGFETSGGQVRK
CCCCCCHHHHEEECCCCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCEECCCCEEEE
VKTTRGDIACDTVVLAAGAWSPQVAKLADVKLPNEPHRHEILSTEPLKPFLGPLVSVLDS
EECCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHC
GLYFSQSMRGEIVGGMGDAKEPAGLNMGSTLRFVSRFAQALMEQLPEVGHVKVLRQWAGC
CHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCE
YDVTPDNNPILGRTPGLDNLLQMSGFVGHGFMMAPAVAERMAKWMATGESDELFTRFNLR
ECCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RYSDAAGHSRDFGTGTLEREDMVIG
HHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]