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The map label for this gene is ycdC [C]

Identifier: 108762326

GI number: 108762326

Start: 949212

End: 949874

Strand: Direct

Name: ycdC [C]

Synonym: MXAN_0832

Alternate gene names: 108762326

Gene position: 949212-949874 (Clockwise)

Preceding gene: 108760137

Following gene: 108763446

Centisome position: 10.39

GC content: 71.95

Gene sequence:

>663_bases
ATGCCACGCGCCACGCGGGGGAAGCTGCCGTCGTCGAAGCCTCGCGAGGGGACCGCCGTTCACGCCAAGGGGACCGAGCG
GGTGGCGTCCATCCTCGATGCGGCCACCGACACACTGGTGGAGGAGGGCCATTCGGGGCTCACGCTGCGCCGGGTGGCTC
AGAGGGCGGGGCTCAGCGTGGGCAACCTCCAGTACTACTTCCCCGCGAAGCAGGACGTGGTGCGGGCGCTGCTCGCGCGC
TACCTGGAAGCCGCCAGCCAACGGGTGCATGCGCGGGTGGAGGAAGGCGGCCGTGCGCCGATGGAGCGGCTTCGGCGCGC
GGTGGAGGCCCTGCTGGAGGACCAGGAGTCGCCGCGTCATTGCCAGCTCTTCGCGGAGCTGTGGGCGCTCGCCGCACGGG
ATGAAATGGTCGCGGACGCGCTCGCCGTCTTCTACGCGGGCTTCCGGGCGGGTGTCGTGGCGCTGCTGCGTGAACTGGCG
CCCGGGCTCAGCCCGTCTCGCCTGGAGCGTCGCGCGGCGTTGGTGGTCGCATTCCTGGAGGGGCTGTCCCTCTTCAGAGG
CGGCGGTGCGCTCCGGAGGGCCTCGGTGCCAGGGTTGGAGCAGGAGCTGCGGGCCGTGTTGGAGGAAGTGCTGGCGGGCG
TCCCCGCAGCCGGGAAGCTATGA

Upstream 100 bases:

>100_bases
TCCCGGAGCACGACGCGCGTCCGGAGCAGGCCCTGGCGGCCCTGCGCGGGTGCGGTGTCCAGGTCCGCTTCGAGGAACAA
TCGCGCCGGGAGGCGGCCTG

Downstream 100 bases:

>100_bases
GTCGGCCGGGCCGCCCTCGTCATCCACGACGAGCACCGACTTGAGCTTGTCCATGGCCAGCGGCGGTACGTCCGTGAAGG
CCAGGCCGACTTCAAAGCGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MPRATRGKLPSSKPREGTAVHAKGTERVASILDAATDTLVEEGHSGLTLRRVAQRAGLSVGNLQYYFPAKQDVVRALLAR
YLEAASQRVHARVEEGGRAPMERLRRAVEALLEDQESPRHCQLFAELWALAARDEMVADALAVFYAGFRAGVVALLRELA
PGLSPSRLERRAALVVAFLEGLSLFRGGGALRRASVPGLEQELRAVLEEVLAGVPAAGKL

Sequences:

>Translated_220_residues
MPRATRGKLPSSKPREGTAVHAKGTERVASILDAATDTLVEEGHSGLTLRRVAQRAGLSVGNLQYYFPAKQDVVRALLAR
YLEAASQRVHARVEEGGRAPMERLRRAVEALLEDQESPRHCQLFAELWALAARDEMVADALAVFYAGFRAGVVALLRELA
PGLSPSRLERRAALVVAFLEGLSLFRGGGALRRASVPGLEQELRAVLEEVLAGVPAAGKL
>Mature_219_residues
PRATRGKLPSSKPREGTAVHAKGTERVASILDAATDTLVEEGHSGLTLRRVAQRAGLSVGNLQYYFPAKQDVVRALLARY
LEAASQRVHARVEEGGRAPMERLRRAVEALLEDQESPRHCQLFAELWALAARDEMVADALAVFYAGFRAGVVALLRELAP
GLSPSRLERRAALVVAFLEGLSLFRGGGALRRASVPGLEQELRAVLEEVLAGVPAAGKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23738; Mature: 23606

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRATRGKLPSSKPREGTAVHAKGTERVASILDAATDTLVEEGHSGLTLRRVAQRAGLSV
CCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
GNLQYYFPAKQDVVRALLARYLEAASQRVHARVEEGGRAPMERLRRAVEALLEDQESPRH
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHH
CQLFAELWALAARDEMVADALAVFYAGFRAGVVALLRELAPGLSPSRLERRAALVVAFLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GLSLFRGGGALRRASVPGLEQELRAVLEEVLAGVPAAGKL
HHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PRATRGKLPSSKPREGTAVHAKGTERVASILDAATDTLVEEGHSGLTLRRVAQRAGLSV
CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
GNLQYYFPAKQDVVRALLARYLEAASQRVHARVEEGGRAPMERLRRAVEALLEDQESPRH
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHH
CQLFAELWALAARDEMVADALAVFYAGFRAGVVALLRELAPGLSPSRLERRAALVVAFLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GLSLFRGGGALRRASVPGLEQELRAVLEEVLAGVPAAGKL
HHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2687254 [H]