Click here to switch to the map view.

The map label for this gene is yfcD [H]

Identifier: 108761873

GI number: 108761873

Start: 4725907

End: 4726425

Strand: Reverse

Name: yfcD [H]

Synonym: MXAN_3927

Alternate gene names: 108761873

Gene position: 4726425-4725907 (Counterclockwise)

Preceding gene: 108760287

Following gene: 108760561

Centisome position: 51.71

GC content: 69.36

Gene sequence:

>519_bases
ATGGAGCTGATTGACGTCATCGACACCCAGGGACAGGTGGTGGGGAGCGCGCCCCGCGACCAGATCTACGGCCAGAAGCT
GCCCCATCGCATCGTGCATGTGATGGTGGAGCGCGACGGCAAGGTCTTCCTGCAGCGGCGCTCCCGGCACATGACCTTCA
TGCCCGGCCACCTGTGCACGTCCGCGGGAGGCCACGTGAGCGCGGGCGAGGCGCCCCTGGAGGCCGCCCAGCGGGAGCTC
CAGGAGGAACTGGGCCTGGAGGGCTCGCTGGTGCCCGTGGCGGAGTTCGTCTTCGACGATGGGCACCACCGGCGCATCTT
TCTCTACCGCGCCCGAATGGAAGGCCCGCTGCGCTTCTCCGAGCGGGAGGTGGACGGGGGCCTGTTCCTGGCGCCGGAGG
AGTTGGGGCGCCTGCTGGACGAGCCCTGTCATCCCCAGTTGTGGCCCTGTCTGGAGCGCCTCTTCCCCGGGCCGAGCGCC
GACGCGCGGACGCGATGGAAACAGTCCTCTACTCGCTGA

Upstream 100 bases:

>100_bases
CTACGACCTGGACGCACACTTCCGGAAGTGGGTGGGGGACCGCATCGAGGTCATTCCCGCGGAAGGCCGGAAGCCCCTGG
TCGCATAGGATGTCCGTGGC

Downstream 100 bases:

>100_bases
CGTCCGTCCTGCTGCGGTCGGGAAACAGCGTCTTCGACCGGCTCAGCTACGGGCTCCGCCGCCAGTCCATCCTCGTCCTC
AACTTCGCCAACAACTTCGT

Product: NUDIX family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MELIDVIDTQGQVVGSAPRDQIYGQKLPHRIVHVMVERDGKVFLQRRSRHMTFMPGHLCTSAGGHVSAGEAPLEAAQREL
QEELGLEGSLVPVAEFVFDDGHHRRIFLYRARMEGPLRFSEREVDGGLFLAPEELGRLLDEPCHPQLWPCLERLFPGPSA
DARTRWKQSSTR

Sequences:

>Translated_172_residues
MELIDVIDTQGQVVGSAPRDQIYGQKLPHRIVHVMVERDGKVFLQRRSRHMTFMPGHLCTSAGGHVSAGEAPLEAAQREL
QEELGLEGSLVPVAEFVFDDGHHRRIFLYRARMEGPLRFSEREVDGGLFLAPEELGRLLDEPCHPQLWPCLERLFPGPSA
DARTRWKQSSTR
>Mature_172_residues
MELIDVIDTQGQVVGSAPRDQIYGQKLPHRIVHVMVERDGKVFLQRRSRHMTFMPGHLCTSAGGHVSAGEAPLEAAQREL
QEELGLEGSLVPVAEFVFDDGHHRRIFLYRARMEGPLRFSEREVDGGLFLAPEELGRLLDEPCHPQLWPCLERLFPGPSA
DARTRWKQSSTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=145, Percent_Identity=38.6206896551724, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 19462; Mature: 19462

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELIDVIDTQGQVVGSAPRDQIYGQKLPHRIVHVMVERDGKVFLQRRSRHMTFMPGHLCT
CCHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHH
SAGGHVSAGEAPLEAAQRELQEELGLEGSLVPVAEFVFDDGHHRRIFLYRARMEGPLRFS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
EREVDGGLFLAPEELGRLLDEPCHPQLWPCLERLFPGPSADARTRWKQSSTR
CEECCCCEEECHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MELIDVIDTQGQVVGSAPRDQIYGQKLPHRIVHVMVERDGKVFLQRRSRHMTFMPGHLCT
CCHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHH
SAGGHVSAGEAPLEAAQRELQEELGLEGSLVPVAEFVFDDGHHRRIFLYRARMEGPLRFS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
EREVDGGLFLAPEELGRLLDEPCHPQLWPCLERLFPGPSADARTRWKQSSTR
CEECCCCEEECHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]