| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is ytcJ [H]
Identifier: 108761832
GI number: 108761832
Start: 758380
End: 760182
Strand: Reverse
Name: ytcJ [H]
Synonym: MXAN_0659
Alternate gene names: 108761832
Gene position: 760182-758380 (Counterclockwise)
Preceding gene: 108762807
Following gene: 108763365
Centisome position: 8.32
GC content: 73.16
Gene sequence:
>1803_bases TTGGCCTCTCCTTCCAGGTGCGCCAGAGTGTCGCGCCGGACGCGCCAGGAATTGGCGCGGGCTTCCAGACAGGTGCCAGA CATGACGCTACGACGACTCGGTGGTGGACTCCTCGGGGCGGTACTCCTTCTGACAAGCGTTTCGGGCTGCACCCGGCGCG TGCCGCCCGTGGATGACAATCCGGCCCCCGTGCCAGAGCCCACCGCCACCACGACAGTGTACGTGGCCGAGCGCATCCGG ACGCTGGACCCGGCGAAGCCCCAGGTGCAGGCGCTCGCGGTGAAGGACGGCAAGGTGCTGGCCACCGGCACCAAGGATGA GGTGCTCGCCGCCGCGGGCAAGGACGCGCGCGTGGTGGACCTGGGCAGCGCCACGGTGGTGCCGGGCCTCACCGACGCGC ACGGGCACCTGGCGGGCCTGGGCCGCGGCCTGGTGACGGTGGACCTGCAGGGTGTGGACACCAAGGAGGAGGCCCTGGAG CGGCTCGCCTCGGCGCCCTCCTCCGCGTTCCAGGGTGAGTGGCTGCTGGGCCGCGGCTGGGACCAGAACGACTGGCCGGA GAAGGCCTTCCCGTCGCGCGCCGACCTGGACAAGCGCTTTCCCTTGCGGCCGGTGGCGCTGAGCCGCGTGGACGGACACG CGCTGTGGGTCAACGGCGAGGCGCTGCGGCGCGCCGGCATCACCCGCGACACGAAGGACCCGGCGGGCGGGCGCATCCTC CGGGGTGAGGGCGGAGAGCCCACCGGCATCCTGGTGGACAACGCCATGGAGCTGGTGGAGTCCGTGCTGCCGCCCGCCAC GGACGCGCAGCACGCGGCGCAGTTGACCGCGGCGCTCCAGCGCGGCGCGCAAGTGGGCCTCACCGGTGTCCACGACGCGG GCATGGACCTGCGCACCTTCCGCCTGCTCCAGCGCTGGGACAAGGGAGGCAAGCTGCCGCTGCGCGTCTACGCCATGGCG GATGGACAGACGGGCGACCGGGAGACGTACCTGAAGGACGGCCCCTATGAGGGGCGCATGCTCACGATGCGCGCGGTGAA GCTCACCCTGGATGGCGCGCTGGGCAGCCGGGGCGCGGCGCTGCACCAGGACTACAGCGACGAACCCGGCCACCGCGGTC TGCTGCTGCTGTCCCCCGAGGAGTACGAAGCGCGCGTGCGCGCCTTCATGGCGCGGGGCTTCCAGGTGTGCACGCATGCG ATTGGAGACCGGGCCAACACGGTGGTGCTGGACGTGCTCGCGCGCGCGGCCGAGGCCACCGGCACGCTCCAGTCCGGCCG GCACCGCGTGGAGCACGCGCAAATCATGCGCCCCGAGGACATCGAACGGCTGGGCCGCAGCGGCTTCATCGCAAGCGTAC AGCCCACGCACGCCACCAGCGACATGCCGTGGGCGGAGGCCCGCGTGGGAGCGGAGCGCATCCGCGGGGCCTACGCGTGG CAGCGGCTGAAGGCGTCCGGCGCGGTGCTGGCGTTGGGCAGCGATTTTCCCGTGGAGCGCCCCAACGTGCTGGCGGGCCT GTACGCGGCGCGCACGCGTCAGGACGTCCGGGGCCTGCCGGAAGGCGGCTGGTACGGGGAGCAGCGGCTGAGCGGGCAGG AGGCGCTGGAGGGCTTCACCGTGGGCGCGGCGCACGCATCCTTCGCCGAAGCCCGGCGCGGCCGGCTCCAGCCCGGCATG GACGCGGACTTCGTGGCCCTGTCGGTGGACCCGGTGGACGGGCCCGTCACCGCGCTGCCCGGCGCCGAGGTGCGGCTGAC AGTGGTGGCCGGCGTGGAGGTCTACCGCGCCTTCCAGCGCTGA
Upstream 100 bases:
>100_bases CCAGGTGGAGTCCACGGGCTGCTCGCCGCGCTCGCAGCCCTGCCCCACCAACCTGTAACCGTGCAGTGACGTCAACGCGC CTGGAGGGGGACACCCATGC
Downstream 100 bases:
>100_bases GCGCCCAGGACAGTCGGGGAATCCAGGGCGCAACGTGGCTGTCGCGGGGAATTGGCGTGTACTGCTATTTCCGCCGTGTC GTGGAGTGCTCTAGCATACG
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 600; Mature: 599
Protein sequence:
>600_residues MASPSRCARVSRRTRQELARASRQVPDMTLRRLGGGLLGAVLLLTSVSGCTRRVPPVDDNPAPVPEPTATTTVYVAERIR TLDPAKPQVQALAVKDGKVLATGTKDEVLAAAGKDARVVDLGSATVVPGLTDAHGHLAGLGRGLVTVDLQGVDTKEEALE RLASAPSSAFQGEWLLGRGWDQNDWPEKAFPSRADLDKRFPLRPVALSRVDGHALWVNGEALRRAGITRDTKDPAGGRIL RGEGGEPTGILVDNAMELVESVLPPATDAQHAAQLTAALQRGAQVGLTGVHDAGMDLRTFRLLQRWDKGGKLPLRVYAMA DGQTGDRETYLKDGPYEGRMLTMRAVKLTLDGALGSRGAALHQDYSDEPGHRGLLLLSPEEYEARVRAFMARGFQVCTHA IGDRANTVVLDVLARAAEATGTLQSGRHRVEHAQIMRPEDIERLGRSGFIASVQPTHATSDMPWAEARVGAERIRGAYAW QRLKASGAVLALGSDFPVERPNVLAGLYAARTRQDVRGLPEGGWYGEQRLSGQEALEGFTVGAAHASFAEARRGRLQPGM DADFVALSVDPVDGPVTALPGAEVRLTVVAGVEVYRAFQR
Sequences:
>Translated_600_residues MASPSRCARVSRRTRQELARASRQVPDMTLRRLGGGLLGAVLLLTSVSGCTRRVPPVDDNPAPVPEPTATTTVYVAERIR TLDPAKPQVQALAVKDGKVLATGTKDEVLAAAGKDARVVDLGSATVVPGLTDAHGHLAGLGRGLVTVDLQGVDTKEEALE RLASAPSSAFQGEWLLGRGWDQNDWPEKAFPSRADLDKRFPLRPVALSRVDGHALWVNGEALRRAGITRDTKDPAGGRIL RGEGGEPTGILVDNAMELVESVLPPATDAQHAAQLTAALQRGAQVGLTGVHDAGMDLRTFRLLQRWDKGGKLPLRVYAMA DGQTGDRETYLKDGPYEGRMLTMRAVKLTLDGALGSRGAALHQDYSDEPGHRGLLLLSPEEYEARVRAFMARGFQVCTHA IGDRANTVVLDVLARAAEATGTLQSGRHRVEHAQIMRPEDIERLGRSGFIASVQPTHATSDMPWAEARVGAERIRGAYAW QRLKASGAVLALGSDFPVERPNVLAGLYAARTRQDVRGLPEGGWYGEQRLSGQEALEGFTVGAAHASFAEARRGRLQPGM DADFVALSVDPVDGPVTALPGAEVRLTVVAGVEVYRAFQR >Mature_599_residues ASPSRCARVSRRTRQELARASRQVPDMTLRRLGGGLLGAVLLLTSVSGCTRRVPPVDDNPAPVPEPTATTTVYVAERIRT LDPAKPQVQALAVKDGKVLATGTKDEVLAAAGKDARVVDLGSATVVPGLTDAHGHLAGLGRGLVTVDLQGVDTKEEALER LASAPSSAFQGEWLLGRGWDQNDWPEKAFPSRADLDKRFPLRPVALSRVDGHALWVNGEALRRAGITRDTKDPAGGRILR GEGGEPTGILVDNAMELVESVLPPATDAQHAAQLTAALQRGAQVGLTGVHDAGMDLRTFRLLQRWDKGGKLPLRVYAMAD GQTGDRETYLKDGPYEGRMLTMRAVKLTLDGALGSRGAALHQDYSDEPGHRGLLLLSPEEYEARVRAFMARGFQVCTHAI GDRANTVVLDVLARAAEATGTLQSGRHRVEHAQIMRPEDIERLGRSGFIASVQPTHATSDMPWAEARVGAERIRGAYAWQ RLKASGAVLALGSDFPVERPNVLAGLYAARTRQDVRGLPEGGWYGEQRLSGQEALEGFTVGAAHASFAEARRGRLQPGMD ADFVALSVDPVDGPVTALPGAEVRLTVVAGVEVYRAFQR
Specific function: Unknown
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: NA
Molecular weight: Translated: 64307; Mature: 64176
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASPSRCARVSRRTRQELARASRQVPDMTLRRLGGGLLGAVLLLTSVSGCTRRVPPVDDN CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC PAPVPEPTATTTVYVAERIRTLDPAKPQVQALAVKDGKVLATGTKDEVLAAAGKDARVVD CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCHHHHHHCCCCCEEEE LGSATVVPGLTDAHGHLAGLGRGLVTVDLQGVDTKEEALERLASAPSSAFQGEWLLGRGW CCCCEECCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEECCCC DQNDWPEKAFPSRADLDKRFPLRPVALSRVDGHALWVNGEALRRAGITRDTKDPAGGRIL CCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCEEEECHHHHHHCCCCCCCCCCCCCEEE RGEGGEPTGILVDNAMELVESVLPPATDAQHAAQLTAALQRGAQVGLTGVHDAGMDLRTF ECCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RLLQRWDKGGKLPLRVYAMADGQTGDRETYLKDGPYEGRMLTMRAVKLTLDGALGSRGAA HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCH LHQDYSDEPGHRGLLLLSPEEYEARVRAFMARGFQVCTHAIGDRANTVVLDVLARAAEAT HCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH GTLQSGRHRVEHAQIMRPEDIERLGRSGFIASVQPTHATSDMPWAEARVGAERIRGAYAW CCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH QRLKASGAVLALGSDFPVERPNVLAGLYAARTRQDVRGLPEGGWYGEQRLSGQEALEGFT HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCE VGAAHASFAEARRGRLQPGMDADFVALSVDPVDGPVTALPGAEVRLTVVAGVEVYRAFQR ECHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEEEECHHHHHHHCC >Mature Secondary Structure ASPSRCARVSRRTRQELARASRQVPDMTLRRLGGGLLGAVLLLTSVSGCTRRVPPVDDN CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC PAPVPEPTATTTVYVAERIRTLDPAKPQVQALAVKDGKVLATGTKDEVLAAAGKDARVVD CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCHHHHHHCCCCCEEEE LGSATVVPGLTDAHGHLAGLGRGLVTVDLQGVDTKEEALERLASAPSSAFQGEWLLGRGW CCCCEECCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEECCCC DQNDWPEKAFPSRADLDKRFPLRPVALSRVDGHALWVNGEALRRAGITRDTKDPAGGRIL CCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCEEEECHHHHHHCCCCCCCCCCCCCEEE RGEGGEPTGILVDNAMELVESVLPPATDAQHAAQLTAALQRGAQVGLTGVHDAGMDLRTF ECCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RLLQRWDKGGKLPLRVYAMADGQTGDRETYLKDGPYEGRMLTMRAVKLTLDGALGSRGAA HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCH LHQDYSDEPGHRGLLLLSPEEYEARVRAFMARGFQVCTHAIGDRANTVVLDVLARAAEAT HCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH GTLQSGRHRVEHAQIMRPEDIERLGRSGFIASVQPTHATSDMPWAEARVGAERIRGAYAW CCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH QRLKASGAVLALGSDFPVERPNVLAGLYAARTRQDVRGLPEGGWYGEQRLSGQEALEGFT HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCE VGAAHASFAEARRGRLQPGMDADFVALSVDPVDGPVTALPGAEVRLTVVAGVEVYRAFQR ECHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEEEECHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]