| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is tgt [H]
Identifier: 108761817
GI number: 108761817
Start: 5723417
End: 5724586
Strand: Reverse
Name: tgt [H]
Synonym: MXAN_4585
Alternate gene names: 108761817
Gene position: 5724586-5723417 (Counterclockwise)
Preceding gene: 108758248
Following gene: 108759072
Centisome position: 62.63
GC content: 67.18
Gene sequence:
>1170_bases ATGGCCGTTCGTTTCGAGCTCCTCACCACCGACCCCACGGGCGCCCGTGCAGGCATCCTGCACACACGCCGGGGTTCCTT CAAAACCCCCATGTTCATGCCGGTGGCCACCCACGCGGGCTTCCGGCACCTGGCCATGGAGGAGGTGAAGGAGGCGGGCG CCAGCATCCTGCTGGCCAACACCTACCATCTGATGCTCCGGCCGGGCGCCGAGGTCTTCAAGCGCTTCGGCGGCATCCAC CCCTTCATGCAGTGGGACGGGGGCGTGCTCACCGATTCGGGCGGCTTCCAGATCTTCTCCCTGCCGGAGGACCGGCTCAT CACGGAGAAGGGCGCCCACTTCCGCAGCTTCTACGACAACAGCCGGCAGCTCCTCAGCCCCGAGTCGAGCATCGCCATGC AGCAGGCCATCAACTCGGAAATCATGATGGTGCTGGACGTGTGCATCGACTCGCGGACCGACGAGGCCGGCACGCGCGAG GCCATGGAGCGCACCCACCGCTGGGCGGTGCGAAGCCTGGAGGCGAAGGCGGCGCGGGACACCGGGCAGGCGATGTTCGG CATCGTCCAGGGCGGCGTCTTCCCTCACCTGCGTGACGAGAGCGCGGCCTTCCTGACGAAGCTGCCCTTCGACGGCTTCG CCATTGGCGGTCTGGCCGTGGGCGAGACGAAGGTGGAGCGCGAGTCCATGACGTTGCGCGCCACCGCGTCCCTGCCCGCC GACAAGCCGCGCTACCTGATGGGCGTGGGCACGCCCACGGACCTGGTGGAAGCCGTGTTGCGCGGTGTGGACATGTTCGA CTGCATCATCCCCACCAAGATGGCCCAGCAGGGGTATGCGTACACGTTCAGCGGGCTCATCCGCATCTCCCGCAGCGTGT TCCGCCTCTCCGACGAGCCGCTGGACGCGGAGTGCGACTGCTACGTGTGCAAGCGCTACACGCGCGGCTACCTGCAGCAC CTGATGCGGGGCAAGCACCACCTGGGCTCGCGCTTCCTGTCCGTGCATAACGTCCGGCACTACCAGAAGCTGATGGGGCG CATCCGCGAGGGCATCCTGAGTGGTACGTACGCGCAGGTGTACCGCGAGCTGAAGGCGGCCATCGCCACGCCCAAGGACT TGAAGGACGAGGCCAACGCGCGCGAGGTGACGTTGAAGGAGGTCGGGTGA
Upstream 100 bases:
>100_bases GGCTGTCCAGGAGGGTAGGTGGCCCCGGATGACGGGTGGGGAGCGGGCAGGGCAGATGGATGCGGTGCCTGCCGGGCATG ACGGGTATAAGGGCCGGCCC
Downstream 100 bases:
>100_bases GCACCGCACCCGACGCCAACCCGCGCGACGGCGACTTCGAGCTCATCACCCTGCGCAATGGCGCTCGCGCCGTGCGGCAC CTGGGCCATGGCGAGGTGAT
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MAVRFELLTTDPTGARAGILHTRRGSFKTPMFMPVATHAGFRHLAMEEVKEAGASILLANTYHLMLRPGAEVFKRFGGIH PFMQWDGGVLTDSGGFQIFSLPEDRLITEKGAHFRSFYDNSRQLLSPESSIAMQQAINSEIMMVLDVCIDSRTDEAGTRE AMERTHRWAVRSLEAKAARDTGQAMFGIVQGGVFPHLRDESAAFLTKLPFDGFAIGGLAVGETKVERESMTLRATASLPA DKPRYLMGVGTPTDLVEAVLRGVDMFDCIIPTKMAQQGYAYTFSGLIRISRSVFRLSDEPLDAECDCYVCKRYTRGYLQH LMRGKHHLGSRFLSVHNVRHYQKLMGRIREGILSGTYAQVYRELKAAIATPKDLKDEANAREVTLKEVG
Sequences:
>Translated_389_residues MAVRFELLTTDPTGARAGILHTRRGSFKTPMFMPVATHAGFRHLAMEEVKEAGASILLANTYHLMLRPGAEVFKRFGGIH PFMQWDGGVLTDSGGFQIFSLPEDRLITEKGAHFRSFYDNSRQLLSPESSIAMQQAINSEIMMVLDVCIDSRTDEAGTRE AMERTHRWAVRSLEAKAARDTGQAMFGIVQGGVFPHLRDESAAFLTKLPFDGFAIGGLAVGETKVERESMTLRATASLPA DKPRYLMGVGTPTDLVEAVLRGVDMFDCIIPTKMAQQGYAYTFSGLIRISRSVFRLSDEPLDAECDCYVCKRYTRGYLQH LMRGKHHLGSRFLSVHNVRHYQKLMGRIREGILSGTYAQVYRELKAAIATPKDLKDEANAREVTLKEVG >Mature_388_residues AVRFELLTTDPTGARAGILHTRRGSFKTPMFMPVATHAGFRHLAMEEVKEAGASILLANTYHLMLRPGAEVFKRFGGIHP FMQWDGGVLTDSGGFQIFSLPEDRLITEKGAHFRSFYDNSRQLLSPESSIAMQQAINSEIMMVLDVCIDSRTDEAGTREA MERTHRWAVRSLEAKAARDTGQAMFGIVQGGVFPHLRDESAAFLTKLPFDGFAIGGLAVGETKVERESMTLRATASLPAD KPRYLMGVGTPTDLVEAVLRGVDMFDCIIPTKMAQQGYAYTFSGLIRISRSVFRLSDEPLDAECDCYVCKRYTRGYLQHL MRGKHHLGSRFLSVHNVRHYQKLMGRIREGILSGTYAQVYRELKAAIATPKDLKDEANAREVTLKEVG
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=354, Percent_Identity=41.2429378531073, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI13375872, Length=277, Percent_Identity=26.3537906137184, Blast_Score=98, Evalue=2e-20, Organism=Escherichia coli, GI1786607, Length=353, Percent_Identity=46.742209631728, Blast_Score=340, Evalue=1e-94, Organism=Caenorhabditis elegans, GI17544680, Length=375, Percent_Identity=38.9333333333333, Blast_Score=256, Evalue=2e-68, Organism=Caenorhabditis elegans, GI25146502, Length=126, Percent_Identity=32.5396825396825, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI19920510, Length=354, Percent_Identity=44.6327683615819, Blast_Score=303, Evalue=1e-82, Organism=Drosophila melanogaster, GI21355311, Length=175, Percent_Identity=27.4285714285714, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 43362; Mature: 43230
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRFELLTTDPTGARAGILHTRRGSFKTPMFMPVATHAGFRHLAMEEVKEAGASILLAN CEEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHCCHHHHHHHHHHHCCCEEEEEE TYHLMLRPGAEVFKRFGGIHPFMQWDGGVLTDSGGFQIFSLPEDRLITEKGAHFRSFYDN EEEEEECCCHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHCCCHHHHHHHC SRQLLSPESSIAMQQAINSEIMMVLDVCIDSRTDEAGTREAMERTHRWAVRSLEAKAARD CHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TGQAMFGIVQGGVFPHLRDESAAFLTKLPFDGFAIGGLAVGETKVERESMTLRATASLPA HHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCEEECCHHHHHHHEEEEEEECCCC DKPRYLMGVGTPTDLVEAVLRGVDMFDCIIPTKMAQQGYAYTFSGLIRISRSVFRLSDEP CCCCEEEECCCHHHHHHHHHHCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCC LDAECDCYVCKRYTRGYLQHLMRGKHHLGSRFLSVHNVRHYQKLMGRIREGILSGTYAQV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YRELKAAIATPKDLKDEANAREVTLKEVG HHHHHHHHCCCHHHHCCCCCCEEEHCCCC >Mature Secondary Structure AVRFELLTTDPTGARAGILHTRRGSFKTPMFMPVATHAGFRHLAMEEVKEAGASILLAN EEEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHCCHHHHHHHHHHHCCCEEEEEE TYHLMLRPGAEVFKRFGGIHPFMQWDGGVLTDSGGFQIFSLPEDRLITEKGAHFRSFYDN EEEEEECCCHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHCCCHHHHHHHC SRQLLSPESSIAMQQAINSEIMMVLDVCIDSRTDEAGTREAMERTHRWAVRSLEAKAARD CHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TGQAMFGIVQGGVFPHLRDESAAFLTKLPFDGFAIGGLAVGETKVERESMTLRATASLPA HHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCEEECCHHHHHHHEEEEEEECCCC DKPRYLMGVGTPTDLVEAVLRGVDMFDCIIPTKMAQQGYAYTFSGLIRISRSVFRLSDEP CCCCEEEECCCHHHHHHHHHHCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCC LDAECDCYVCKRYTRGYLQHLMRGKHHLGSRFLSVHNVRHYQKLMGRIREGILSGTYAQV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YRELKAAIATPKDLKDEANAREVTLKEVG HHHHHHHHCCCHHHHCCCCCCEEEHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA