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The map label for this gene is abnA [H]

Identifier: 108761777

GI number: 108761777

Start: 6543634

End: 6545166

Strand: Reverse

Name: abnA [H]

Synonym: MXAN_5247

Alternate gene names: 108761777

Gene position: 6545166-6543634 (Counterclockwise)

Preceding gene: 108762970

Following gene: 108758936

Centisome position: 71.61

GC content: 67.51

Gene sequence:

>1533_bases
ATGGGGCAGGGTGCAGAGGGTTTGTATTTCTTGTTTTGCTGGTATTTCGTGTTAACTCGTGCCCCTCCATCTGGAGGTGG
TTCCATGAGGAAGTTCCCTCGCATCCTGGCGCTCACGGTGGTGTGCGCCGTCTCTGCCTTTGCATCCGGTTGTGGCGACG
AGCGCAACGACACACCGCTCGCGGAGGAGGCTCCGGCAGGCACCGCTGGCGCGTCGCTCGCGTGCAGCACTCGCATCACC
TACGGCGAGAGGTGGATTCGCCCCTCGGGGCACACCGCGCAGTACGACATCGCGAGTGGTTTGGTGACGTGGGATGGCAC
CTGCATCAACGAGGGCAGCAACTCGTATGCGGTGCTCTCGAACGGCTGGCGGCCGTACTTCACCGGCAACAACGCGTGTG
TCATGGCGCTCGACACGGACTGTGCCGGGGCCACCGCGTGCTCGACGCGCGTCACCTATGCCGCGTCGTGGCTGCACCCG
TCGGGACACCCATCGCAGTACGACGACGTGAGTGGGCGCGTGTTCTGGGACCGGGCCTGCACGAACGAGGGCAGCAACTC
GTACGCGGTGCTCTCCAACGGGTGGCGGCCGTACTTCAGCGGCACGGGCGCGTGCGGCATGTCCTTCCGCTACACGGGGT
GCGGCGGCCTGTACCGGAACCCGGTGGTCCCCGTGGATTGCGCGGACCCGGGCGTCATCTATGATGGGACGCGGTACGTC
GCCGCGTGCACGTCTGGCGGCGCGGCGAATGCGTTCTCCCTGCGCACGTCGACGGACCTGGTGACGTGGACGAGCGCGGG
CTCCATCTTCCCGTCGGCGTCGAAGCCCACCTGGGCGACGGGAGACTTCTGGGCGCCGGAAATCCACAAGGTGGGGACGC
GCTACATCGCTTACTTCACCGCGCGGCACTCGAACGGGAAGCTGTCCATCGGCGCGGCGACGTCGGCGAGCGCGCTCGGG
CCCTTCACGGACATCGGCCGGCCGCTCGTGCATGACACCGCGATGGGGATGATTGACGCCACCTTCTTCACGAGCACCAC
CGGGGCGCCCTACCTGGTGTGGAAGGCGGACGGCAATGCGGTGGGGCGGCCGACGCCCATCTACGGGCAGGCGCTGTCAG
CGGATGGCCTGTCGCTGGTGGGCTCGCGCCAGACGCTCATCAGCAACAACCTCTCGTGGGAGGGCGGAGTCGTCGAGGCG
CCGTGGGTCGTCGCTCGGGGCGGCTACTACTACCTCTTCTATAGCGGTAACGCGTACTACAACAGCACCTACGCCGTGGG
CGTCGCGCGGGCGACGAGCCCGCTGGGCCCGTACACCAAGCTGGGCTCGCCGATTCTCAAGACGGGTGGTGGCTGGGTGG
GGCCGGGACACAACTCCGTCGTCACCGGACCGCGCGGTGACATGTACATGGTCTACCACGCGTGGAACAGCGCCCACACG
GCGCGGGTGATGCTCGTGGATGCAATCACGTGGCCCAATGGCTGGCCCGCGGTTCCGTCCGCGCCGTCGGCGAGCTCGCG
GCCCATGCCGTAG

Upstream 100 bases:

>100_bases
TCCGGCGGCCCCATTGAATAGGTAGCGCGCCAGGCGTGCGTGTCCCGGTGCTCATGCGGGTGGAGGTTCAAGTGATGTTG
TCTCTGGTCGACTGAAGGAC

Downstream 100 bases:

>100_bases
CAGCTTCGCTGTGACGACTGCCTCCGCGCCGCGGCCTCATGCGCCTCGGCGCGGAGGTGCGCGTCGGCGGGGGAGGGCGG
TTTGCCCGCTGAAGGCAATC

Product: glycosy hydrolase family protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MGQGAEGLYFLFCWYFVLTRAPPSGGGSMRKFPRILALTVVCAVSAFASGCGDERNDTPLAEEAPAGTAGASLACSTRIT
YGERWIRPSGHTAQYDIASGLVTWDGTCINEGSNSYAVLSNGWRPYFTGNNACVMALDTDCAGATACSTRVTYAASWLHP
SGHPSQYDDVSGRVFWDRACTNEGSNSYAVLSNGWRPYFSGTGACGMSFRYTGCGGLYRNPVVPVDCADPGVIYDGTRYV
AACTSGGAANAFSLRTSTDLVTWTSAGSIFPSASKPTWATGDFWAPEIHKVGTRYIAYFTARHSNGKLSIGAATSASALG
PFTDIGRPLVHDTAMGMIDATFFTSTTGAPYLVWKADGNAVGRPTPIYGQALSADGLSLVGSRQTLISNNLSWEGGVVEA
PWVVARGGYYYLFYSGNAYYNSTYAVGVARATSPLGPYTKLGSPILKTGGGWVGPGHNSVVTGPRGDMYMVYHAWNSAHT
ARVMLVDAITWPNGWPAVPSAPSASSRPMP

Sequences:

>Translated_510_residues
MGQGAEGLYFLFCWYFVLTRAPPSGGGSMRKFPRILALTVVCAVSAFASGCGDERNDTPLAEEAPAGTAGASLACSTRIT
YGERWIRPSGHTAQYDIASGLVTWDGTCINEGSNSYAVLSNGWRPYFTGNNACVMALDTDCAGATACSTRVTYAASWLHP
SGHPSQYDDVSGRVFWDRACTNEGSNSYAVLSNGWRPYFSGTGACGMSFRYTGCGGLYRNPVVPVDCADPGVIYDGTRYV
AACTSGGAANAFSLRTSTDLVTWTSAGSIFPSASKPTWATGDFWAPEIHKVGTRYIAYFTARHSNGKLSIGAATSASALG
PFTDIGRPLVHDTAMGMIDATFFTSTTGAPYLVWKADGNAVGRPTPIYGQALSADGLSLVGSRQTLISNNLSWEGGVVEA
PWVVARGGYYYLFYSGNAYYNSTYAVGVARATSPLGPYTKLGSPILKTGGGWVGPGHNSVVTGPRGDMYMVYHAWNSAHT
ARVMLVDAITWPNGWPAVPSAPSASSRPMP
>Mature_509_residues
GQGAEGLYFLFCWYFVLTRAPPSGGGSMRKFPRILALTVVCAVSAFASGCGDERNDTPLAEEAPAGTAGASLACSTRITY
GERWIRPSGHTAQYDIASGLVTWDGTCINEGSNSYAVLSNGWRPYFTGNNACVMALDTDCAGATACSTRVTYAASWLHPS
GHPSQYDDVSGRVFWDRACTNEGSNSYAVLSNGWRPYFSGTGACGMSFRYTGCGGLYRNPVVPVDCADPGVIYDGTRYVA
ACTSGGAANAFSLRTSTDLVTWTSAGSIFPSASKPTWATGDFWAPEIHKVGTRYIAYFTARHSNGKLSIGAATSASALGP
FTDIGRPLVHDTAMGMIDATFFTSTTGAPYLVWKADGNAVGRPTPIYGQALSADGLSLVGSRQTLISNNLSWEGGVVEAP
WVVARGGYYYLFYSGNAYYNSTYAVGVARATSPLGPYTKLGSPILKTGGGWVGPGHNSVVTGPRGDMYMVYHAWNSAHTA
RVMLVDAITWPNGWPAVPSAPSASSRPMP

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 53898; Mature: 53766

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQGAEGLYFLFCWYFVLTRAPPSGGGSMRKFPRILALTVVCAVSAFASGCGDERNDTPL
CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AEEAPAGTAGASLACSTRITYGERWIRPSGHTAQYDIASGLVTWDGTCINEGSNSYAVLS
HHCCCCCCCCCCEEEEEEEECCCEEECCCCCEEEEEHHCCEEEECCEEEECCCCCEEEEE
NGWRPYFTGNNACVMALDTDCAGATACSTRVTYAASWLHPSGHPSQYDDVSGRVFWDRAC
CCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHH
TNEGSNSYAVLSNGWRPYFSGTGACGMSFRYTGCGGLYRNPVVPVDCADPGVIYDGTRYV
CCCCCCCEEEEECCCEECCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCEEECCCEEE
AACTSGGAANAFSLRTSTDLVTWTSAGSIFPSASKPTWATGDFWAPEIHKVGTRYIAYFT
EEECCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEE
ARHSNGKLSIGAATSASALGPFTDIGRPLVHDTAMGMIDATFFTSTTGAPYLVWKADGNA
EECCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHEEEEEEECCCCCCEEEEECCCCC
VGRPTPIYGQALSADGLSLVGSRQTLISNNLSWEGGVVEAPWVVARGGYYYLFYSGNAYY
CCCCCCCCCCEECCCCCEEECCCHHHHCCCCCCCCCEEECCEEEEECCEEEEEECCCEEE
NSTYAVGVARATSPLGPYTKLGSPILKTGGGWVGPGHNSVVTGPRGDMYMVYHAWNSAHT
CCEEEEEEEECCCCCCCHHHHCCCHHHCCCCEECCCCCCEEECCCCCEEEEEEECCCCCE
ARVMLVDAITWPNGWPAVPSAPSASSRPMP
EEEEEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GQGAEGLYFLFCWYFVLTRAPPSGGGSMRKFPRILALTVVCAVSAFASGCGDERNDTPL
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AEEAPAGTAGASLACSTRITYGERWIRPSGHTAQYDIASGLVTWDGTCINEGSNSYAVLS
HHCCCCCCCCCCEEEEEEEECCCEEECCCCCEEEEEHHCCEEEECCEEEECCCCCEEEEE
NGWRPYFTGNNACVMALDTDCAGATACSTRVTYAASWLHPSGHPSQYDDVSGRVFWDRAC
CCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHH
TNEGSNSYAVLSNGWRPYFSGTGACGMSFRYTGCGGLYRNPVVPVDCADPGVIYDGTRYV
CCCCCCCEEEEECCCEECCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCEEECCCEEE
AACTSGGAANAFSLRTSTDLVTWTSAGSIFPSASKPTWATGDFWAPEIHKVGTRYIAYFT
EEECCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEE
ARHSNGKLSIGAATSASALGPFTDIGRPLVHDTAMGMIDATFFTSTTGAPYLVWKADGNA
EECCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHEEEEEEECCCCCCEEEEECCCCC
VGRPTPIYGQALSADGLSLVGSRQTLISNNLSWEGGVVEAPWVVARGGYYYLFYSGNAYY
CCCCCCCCCCEECCCCCEEECCCHHHHCCCCCCCCCEEECCEEEEECCEEEEEECCCEEE
NSTYAVGVARATSPLGPYTKLGSPILKTGGGWVGPGHNSVVTGPRGDMYMVYHAWNSAHT
CCEEEEEEEECCCCCCCHHHHCCCHHHCCCCEECCCCCCEEECCCCCEEEEEEECCCCCE
ARVMLVDAITWPNGWPAVPSAPSASSRPMP
EEEEEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]