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The map label for this gene is ybjK [H]

Identifier: 108761458

GI number: 108761458

Start: 2575960

End: 2576508

Strand: Reverse

Name: ybjK [H]

Synonym: MXAN_2234

Alternate gene names: 108761458

Gene position: 2576508-2575960 (Counterclockwise)

Preceding gene: 108761654

Following gene: 108760428

Centisome position: 28.19

GC content: 70.86

Gene sequence:

>549_bases
GTGGCCACGCGTAGACATGACCCCGAGCGAAGGGATCGCATCATCGAGGCCGCGCTGGCGGTCATCGCCGAAGGGGGCGT
GGCCGGCACGTCGCACCGCCGGGTCGCCGAGCGCGCGGGCGTCCCCCTGGGCTCGATGACCTACCACTTCACGAGCATGG
ACGAACTGCTGCACGAGGCGTTCAGCCGCTTCGCCCAGCGCATCAGCGAGCGGTTCGCCGAGCGGATCGCCGCGGCCACC
GACCTTGACGCGTTGGTCTCCGCCATCGTCCACATCGTGCACGACGACCTCGCGGCGGGGCAGGACGAGCTCGTGCTCAC
GCTCGAGCTCTACACGCTCGCGGCGCGCCAACGCGCCTTCCGGCAAATCACCCACGACTGGATGCGCCGCAGCCGCGCCG
TGCTGGAACGGTTCGTCGACGCCAGGATGGCGCACGAGCTCGACGCCTTGATTGAGGGGCTGTTCATCCACGTCAGCCTC
GACCCCGCCCCCCGCAGCCGCGACCTGACCCGGGACGCCGTGCGCCGCCTTCTCTCGCGCTCCCCCTGA

Upstream 100 bases:

>100_bases
AGCGCCACGGCCCGGTGGAATAACGGGATATGTACGTTCGTACATATCGCCAGCGGCACCTCGCGGCTTCATGCCGCCTG
CCGCATCCCCGGAGACCCAC

Downstream 100 bases:

>100_bases
CCCGCCATGCCCTCCTCCTCCCCTCGTCTGGTCCCCCGCGAGTACCGGGCGGCCCGCGCGGCCGTCGCGGCGCTGTTCCT
CACCAACGGCGCCATCCTCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MATRRHDPERRDRIIEAALAVIAEGGVAGTSHRRVAERAGVPLGSMTYHFTSMDELLHEAFSRFAQRISERFAERIAAAT
DLDALVSAIVHIVHDDLAAGQDELVLTLELYTLAARQRAFRQITHDWMRRSRAVLERFVDARMAHELDALIEGLFIHVSL
DPAPRSRDLTRDAVRRLLSRSP

Sequences:

>Translated_182_residues
MATRRHDPERRDRIIEAALAVIAEGGVAGTSHRRVAERAGVPLGSMTYHFTSMDELLHEAFSRFAQRISERFAERIAAAT
DLDALVSAIVHIVHDDLAAGQDELVLTLELYTLAARQRAFRQITHDWMRRSRAVLERFVDARMAHELDALIEGLFIHVSL
DPAPRSRDLTRDAVRRLLSRSP
>Mature_181_residues
ATRRHDPERRDRIIEAALAVIAEGGVAGTSHRRVAERAGVPLGSMTYHFTSMDELLHEAFSRFAQRISERFAERIAAATD
LDALVSAIVHIVHDDLAAGQDELVLTLELYTLAARQRAFRQITHDWMRRSRAVLERFVDARMAHELDALIEGLFIHVSLD
PAPRSRDLTRDAVRRLLSRSP

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=177, Percent_Identity=36.7231638418079, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20571; Mature: 20440

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRRHDPERRDRIIEAALAVIAEGGVAGTSHRRVAERAGVPLGSMTYHFTSMDELLHEA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FSRFAQRISERFAERIAAATDLDALVSAIVHIVHDDLAAGQDELVLTLELYTLAARQRAF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH
RQITHDWMRRSRAVLERFVDARMAHELDALIEGLFIHVSLDPAPRSRDLTRDAVRRLLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHC
SP
CC
>Mature Secondary Structure 
ATRRHDPERRDRIIEAALAVIAEGGVAGTSHRRVAERAGVPLGSMTYHFTSMDELLHEA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FSRFAQRISERFAERIAAATDLDALVSAIVHIVHDDLAAGQDELVLTLELYTLAARQRAF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH
RQITHDWMRRSRAVLERFVDARMAHELDALIEGLFIHVSLDPAPRSRDLTRDAVRRLLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHC
SP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]