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The map label for this gene is ybaO [C]

Identifier: 108761353

GI number: 108761353

Start: 560676

End: 561191

Strand: Direct

Name: ybaO [C]

Synonym: MXAN_0502

Alternate gene names: 108761353

Gene position: 560676-561191 (Clockwise)

Preceding gene: 108759643

Following gene: 108758801

Centisome position: 6.13

GC content: 62.79

Gene sequence:

>516_bases
ATGAAATTAGATTTCAAATTCTTATTATTTATGGAACTTAAAGACGAGCTCGACGCCATCGATCTGCAGTTGTTGAACCT
GCTGCAAAACGACGCCTCGACCAGCAACCAGACGCTGGCCGAGCAGGTCCACGTCTCGCCGCCCACCTGCCTGCGGCGCG
TGCGGCGGTTGCATGAGCTCGGCCTGATCGAAAAGCAGGTGGCCCTGCTGCAGCCCGACCGGCTCGCCCAACTGCAGGGG
CACGGGCTCACGGCCATTGTCGAGATCACGCTGGATCAGCAGGGCGCGGAGTTTCTGCAGGCCTTTGAAACCCGTGTGGT
CGCCGATGCCCAGGTGCAGCAGTGCTGGCGCGTGTCGCCGGGGCCGGACTTCGTGCTCGTGGTGCACGCGCACGACATGC
CCGCCTACCACGCGCTCGCCCAGCGCTTGTTCACGCACGACGCCAACGTGCGCAACGTGAAGGCATTCTTCGCCACGCAC
CGCGCCAAGTTCGACACGCGCGTGCCCTTGCTCTGA

Upstream 100 bases:

>100_bases
TGCTGCGCCCCCGAATGTCAGCGATGGTGCGCAGAGCGATTTGAAATTTCTGATTATTTTTTCAACTCATTTCGGAATAA
TATTTCGCAATAAGAGTTGG

Downstream 100 bases:

>100_bases
GGCGCCGCGACATCCCGCTGCCGGCACGCTTGAATCGCGTACGTTGATCTCCATCTAGAGACATTGGCACTCCACGCCCC
CGCACCATCGCGATGCGGTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKLDFKFLLFMELKDELDAIDLQLLNLLQNDASTSNQTLAEQVHVSPPTCLRRVRRLHELGLIEKQVALLQPDRLAQLQG
HGLTAIVEITLDQQGAEFLQAFETRVVADAQVQQCWRVSPGPDFVLVVHAHDMPAYHALAQRLFTHDANVRNVKAFFATH
RAKFDTRVPLL

Sequences:

>Translated_171_residues
MKLDFKFLLFMELKDELDAIDLQLLNLLQNDASTSNQTLAEQVHVSPPTCLRRVRRLHELGLIEKQVALLQPDRLAQLQG
HGLTAIVEITLDQQGAEFLQAFETRVVADAQVQQCWRVSPGPDFVLVVHAHDMPAYHALAQRLFTHDANVRNVKAFFATH
RAKFDTRVPLL
>Mature_171_residues
MKLDFKFLLFMELKDELDAIDLQLLNLLQNDASTSNQTLAEQVHVSPPTCLRRVRRLHELGLIEKQVALLQPDRLAQLQG
HGLTAIVEITLDQQGAEFLQAFETRVVADAQVQQCWRVSPGPDFVLVVHAHDMPAYHALAQRLFTHDANVRNVKAFFATH
RAKFDTRVPLL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=154, Percent_Identity=34.4155844155844, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787116, Length=153, Percent_Identity=33.9869281045752, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 19428; Mature: 19428

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDFKFLLFMELKDELDAIDLQLLNLLQNDASTSNQTLAEQVHVSPPTCLRRVRRLHEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
GLIEKQVALLQPDRLAQLQGHGLTAIVEITLDQQGAEFLQAFETRVVADAQVQQCWRVSP
CHHHHHHHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GPDFVLVVHAHDMPAYHALAQRLFTHDANVRNVKAFFATHRAKFDTRVPLL
CCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKLDFKFLLFMELKDELDAIDLQLLNLLQNDASTSNQTLAEQVHVSPPTCLRRVRRLHEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
GLIEKQVALLQPDRLAQLQGHGLTAIVEITLDQQGAEFLQAFETRVVADAQVQQCWRVSP
CHHHHHHHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GPDFVLVVHAHDMPAYHALAQRLFTHDANVRNVKAFFATHRAKFDTRVPLL
CCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]