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The map label for this gene is rpoB

Identifier: 108761304

GI number: 108761304

Start: 3599058

End: 3603284

Strand: Direct

Name: rpoB

Synonym: MXAN_3077

Alternate gene names: 108761304

Gene position: 3599058-3603284 (Clockwise)

Preceding gene: 108762798

Following gene: 108759710

Centisome position: 39.38

GC content: 64.96

Gene sequence:

>4227_bases
ATGCCGACGCAGATCCAGAACAATTTCCGCGTGCGGAAGACCTTCGCGAAGATCGCGAAGATCATCGACATTCCCAATCT
TATCAACATCCAGAAGCAGTCCTACGAGAAGTTCCTCCAGGCGGACATTGCCGCCGACAAGCGCGAGGACCTCGGTCTTC
AGGGCGTCTTCAAGTCGGTGTTCCCTATCCGCGACTTCAACGAGACCTCCTCGCTGGAGTTCGTGAGCTACCACCTGGAG
CGCCCGAAGTACGACGTAGATGAGTGCCACCAGCGTGGCATGACGTATTCGGCGCCCATCAAGGTGGTGGTGCGCCTGGT
CGTGTGGGACAAGGACGAGGAGACCGGCGCCCAGTCCATCCGCGACGTGAAGGAGCAGGAGGTCTACTTCGGCGAAATCC
CGCTGATGACCCAGAACGGCACCTTCATCATCAACGGTACCGAGCGCGTCGTCGTCAGCCAGCTGCACCGAAGCCCGGGC
GCCTTCTTCGACCATGACAAGGGCAAGAGCCACTCGTCTGGCAAGCTGCTCTACAACGCCCGCATCATTCCCTACCGCGG
TTCGTGGATCGACTTCGAGTTCGACCACAAGGACCTGCTGTACGTGCGCATCGACCGCCGCCGCAAGCTGCCGGCCACGG
TGCTCATCCGCGCGCTCGGCGCCGTCCCGGACACCGCGAAGAAGAACCCGCTGGAGTTCAAGGGCTCCACCGAGGAGATC
CTCAACTACTACTACGCGACGGAGACGATCTACCTCCACAGCGCGGAGGAGTTCGAGAAGAGCGTCGAGCTCGAGCTGCT
GCCCGGTCAGCGCGCGACCCGCGACATCAAGGCCAAGACGGGCGAGCTGATCGTCAAGAAGAACCGCAAGTTCACCCGCG
CCGCCATCAAGAAGCTCGAAGCGGCGAAGATGAAGACGCTCCCGATCGATGCGGACGAGCTCTTCACCAAGGTGTCCGCC
TACGACGTGGTCGAAGAGACCAACGGCGTGGTGCTCCTCGAGTGCAACGAGGAAGTCACCCAGGAGAAGGTCGACGAGCT
CCTCAAGCACGGCATCAAGGAGTTCAAGGTCCTCTTCATCGACAACCTCAACGTGGGCCCGTACCTGCGTGAGACGTTGA
TGCTGGACAAGCTCGAGACCCCCGAGCAGTCCATCATGGAGATCTACCGCCGCCTGCGCCCTGGCGATCCGCCGACGCCG
GAGACGGCCATCAACCTGTTCACCAACCTGTTCTTCAACCCGGAGCGCTACGACCTCTCCAAGGTCGGCCGCCTCAAGCT
GAACTTCAAGTTCGGCCTCGAGGAGCCGCTCGACGGGCAGATCCTCACCAAGCGGGACATCCTCGAGGTGATCCGCTACC
TGATCGATCTGAAGAACGGCAAGGGGACCATCGACGACATCGACCACCTGGGCAACCGCCGCGTCCGCGCGGTGGGCGAG
CTGCTGGAGAACCAGTACCGCATCGGCCTGGTGCGCATGGAGCGGGCGATCAAGGAGCGCATGAGCCTCCAGGAGATCGA
GACGCTCATGCCGCACGATCTCATCAACGCCAAGCCCGTCACGGCGGTCATCAAGGAGTTCTTCGGGTCCAGCCAGCTGT
CGCAGTTCATGGACCAGACGAACCCCCTGTCCGAAGTCACCCACAAGCGGCGCCTGTCGGCGCTCGGGCCCGGTGGCCTC
ACCCGCGAGCGCGCGGGCTTCGAGGTGCGCGACGTGCACCCGACGCACTACGGCCGCATCTGCCCCATCGAGACGCCGGA
AGGTCCGAACATCGGCCTCATCGCGTCGCTGTCCACCTACGCGCGCGTCAATGAGTTCGGCTTCGTCGAGACGCCGTACC
GCAAGGTCGAGGCGGGCGTGGTGACGAACGACGTGGCTTTCTACTCCGCTCTCGAGGAGGAGAAGCACACGATCGCCCAG
GCGAACGCGGAGACGGACAAGAAGGGCAAGTTCGCCAACGCGCTGGTGTCCAGCCGCCGGGGTGGTGAGTTCGTCCAGGC
TCGCGCCGAGGACGTGGACCTGATGGACGTGTCCCCGAAGCAGCTCGTGTCGGTGGCCGCGTCGCTCATCCCGTTCCTGG
AGAACGACGACGCCAACCGCGCGCTCATGGGCTCCAACATGCAGCGCCAGGCCGTTCCGCTGCTGCGCACCGCGGCGCCG
CTGGTGGGCACGGGCATCGAGTCCATCGTCGCCCGCGACTCCGGCGTCACCTGCGTGGCCCGGCGCGACGGCATCGTGGA
GAGCGTGGACGCCGGCCGCATCGTGGTGAAGGCGGACGTGCCGGCCTCGCTGAGCGATGTCACGAGCGAGGTCGACATCT
ACAACCTGCTCAAGTACCAGCGCTCCAACCAGAACACCTGCCTCAACCAGAAGCCCATCATCAGCAAGGGCGACCGGGTG
ATGAAGGGTGACGTCATCGCCGACGGTCCGGCCACCGAGACGGGCGAGCTGGCGCTGGGCCAGAACGTGGTCGTCGCGTT
CATGCCGTGGCAGGGCTACAACTTCGAGGACTCCATCCTCATCAGCGAGCGCATCCTCAAGGACGACGTCTTCACGTCGA
TCCACATCGAGGAGTTCGAGTGCATCGCGCGCGACACCAAGCTGGGCAAGGAGGAGATCACCCGCGACATCCCGAACGTG
GGTGAGGAGGCCCTCAAGGACCTCGACGAGAGCGGCATCATCCGCATCGGCGCCGAGGTGAAGCCCGGCGACGTGCTGGT
GGGCAAGATCACCCCGAAGGGCGAGACGCAGCTGTCTCCCGAAGAGAAGCTGCTGCGCGCCATCTTCGGCGAGAAGGCCG
GCGACGTGCGTGACAGCTCGCTGCGCGTCCCTCCGGGCGTGGTGGGCACCGTCATCAACGCCAAGGTGTTCAGCCGCAAG
GGCGTGGAGAAGGACGAGCGCGCCAAGCAGATCGAGTCCATGGAGGAGGCGAAGCTCCTCAAGGACCAGAACGACGAGAT
CAAGGTCCTCCAGGACAGCGCGTTCGGCCGCATCCGCGGCCTGGTGCGCACCAAGGAGGTCCAGGGCAAGCTCGTGGATG
ACAAGGGGAAGATCCTCCTGAAGAAGGGGGACATCCTCGACGACGAGCTGCTGTCCACGGTGCCCTACAAGTACTGGGGT
GAGATCTCCGTCGGCGACCCGCTGGACTCGCGCCTGCGCGACATCCTCCGCAACCTGGAGGAGACGAAGGAGGCCGTGAA
GCTGGCCTTCGGCGAGAAGATCGCCCGCATCAAGAAGGGCGACGAGCTGCCGCCGGGCGTCATCAAGATGGTGAAGGTGT
ACGTCGCCATCAAGCGCAAGCTGGCCGTGGGCGACAAGATGGCCGGCCGCCACGGAAACAAGGGCGTCGTGTCCCGCATC
CTCCCCGAGGAGGACATGCCGTACCTGGAGGACGGGCGTCCGGTGGACATCGTCCTCAACCCGCTGGGCGTGCCCTCGCG
CATGAACATCGGGCAGATCCTCGAGACGCACCTGGGCTGGGCCGCCAAGGGCACTGGCGAAGCGCTGCAGCGCTACGTCG
AGGCCAACTGGAGCTCGGACGCCATCAAGGAGCGCCTCAAGGTCATCTACAGCGACCCGGCGTTCGGCGAGTTCCTCGAC
AAGCTCGACGACGAGGAGATCAAGCAGCTGTGCCTCCGCTCCAAGCGGGGCATCCACGTCGCCACGCCCGTCTTCGACGG
CGCACAGGAGACGGAGATCCACGCCCTGCTGGACGAGGGGCAGCTGCCCCGCTCGGGCCAGATGGTGCTCTTCGACGGGC
GCACCGGTGAGCCGTTCGACCAGAACGTCACCGTGGGCGTCATGTACATGCTGAAGCTGCACCACCTGGTGGACGAGAAG
ATCCACGCCCGCTCCATCGGGCCCTACTCGCTCGTCACGCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGTCAGCG
ACTGGGCGAGATGGAAGTCTGGGCGATGGAGGCCTACGGCGCGGCGTACACGCTGCAGGAGTTCCTCACCGTCAAGTCGG
ACGACGTGGTGGGCCGCACGCGCATGTACGAGGCCATCGTCAAGGGCGACAACGTCCTGGAGAGCGGCCTGCCCGAGTCG
TTCAACGTGCTCCTCAAGGAACTCCAGTCGCTCGCGCTCGACGTGGAGCTGCTGGAGAGCGCCCCGCCGGAGCGGCAGCG
CAGCTTCGGAGGCGACTTCCTCGGCGGTGGTGACGGCGAGGAGCGCAAGACGGGAACTGAGGCCTGA

Upstream 100 bases:

>100_bases
GTGGGGGCGCCGGCTTTGCCCATTTGACCGTTGCAAATTTCCCGGCGCCGCCGCGCGTTACTGAAGTTTGCCCGCCCGAG
CAGTCGTCCCCGGAGCCAGA

Downstream 100 bases:

>100_bases
TTGCACGGAGCGCCCGCCTGACCGGCCGCCCGCCGTCCCGATAGGGGCGGGCGCGGCCGGAACGGGGCGGGGGCCCGAAT
CAGCTGGCGGCCCCCCTTGG

Product: DNA-directed RNA polymerase subunit beta

Products: NA

Alternate protein names: RNAP subunit beta; RNA polymerase subunit beta; Transcriptase subunit beta

Number of amino acids: Translated: 1408; Mature: 1407

Protein sequence:

>1408_residues
MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSVFPIRDFNETSSLEFVSYHLE
RPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPG
AFFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI
LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLEAAKMKTLPIDADELFTKVSA
YDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFIDNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTP
ETAINLFTNLFFNPERYDLSKVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGL
TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQ
ANAETDKKGKFANALVSSRRGGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP
LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQRSNQNTCLNQKPIISKGDRV
MKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNV
GEEALKDLDESGIIRIGAEVKPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILLKKGDILDDELLSTVPYKYWG
EISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRI
LPEEDMPYLEDGRPVDIVLNPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIYSDPAFGEFLD
KLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFDQNVTVGVMYMLKLHHLVDEK
IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPES
FNVLLKELQSLALDVELLESAPPERQRSFGGDFLGGGDGEERKTGTEA

Sequences:

>Translated_1408_residues
MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSVFPIRDFNETSSLEFVSYHLE
RPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPG
AFFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI
LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLEAAKMKTLPIDADELFTKVSA
YDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFIDNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTP
ETAINLFTNLFFNPERYDLSKVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGL
TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQ
ANAETDKKGKFANALVSSRRGGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP
LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQRSNQNTCLNQKPIISKGDRV
MKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNV
GEEALKDLDESGIIRIGAEVKPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILLKKGDILDDELLSTVPYKYWG
EISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRI
LPEEDMPYLEDGRPVDIVLNPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIYSDPAFGEFLD
KLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFDQNVTVGVMYMLKLHHLVDEK
IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPES
FNVLLKELQSLALDVELLESAPPERQRSFGGDFLGGGDGEERKTGTEA
>Mature_1407_residues
PTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSVFPIRDFNETSSLEFVSYHLER
PKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGA
FFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEIL
NYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLEAAKMKTLPIDADELFTKVSAY
DVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFIDNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPE
TAINLFTNLFFNPERYDLSKVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGEL
LENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT
RERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQA
NAETDKKGKFANALVSSRRGGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAPL
VGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQRSNQNTCLNQKPIISKGDRVM
KGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVG
EEALKDLDESGIIRIGAEVKPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRKG
VEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILLKKGDILDDELLSTVPYKYWGE
ISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRIL
PEEDMPYLEDGRPVDIVLNPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIYSDPAFGEFLDK
LDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFDQNVTVGVMYMLKLHHLVDEKI
HARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESF
NVLLKELQSLALDVELLESAPPERQRSFGGDFLGGGDGEERKTGTEA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0085

COG function: function code K; DNA-directed RNA polymerase, beta subunit/140 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta chain family

Homologues:

Organism=Homo sapiens, GI4505941, Length=301, Percent_Identity=30.2325581395349, Blast_Score=120, Evalue=1e-26,
Organism=Homo sapiens, GI212286172, Length=386, Percent_Identity=27.2020725388601, Blast_Score=119, Evalue=2e-26,
Organism=Homo sapiens, GI33469941, Length=386, Percent_Identity=27.2020725388601, Blast_Score=119, Evalue=2e-26,
Organism=Homo sapiens, GI238908505, Length=138, Percent_Identity=35.5072463768116, Blast_Score=80, Evalue=1e-14,
Organism=Homo sapiens, GI238908503, Length=138, Percent_Identity=35.5072463768116, Blast_Score=80, Evalue=1e-14,
Organism=Escherichia coli, GI1790419, Length=1379, Percent_Identity=56.8527918781726, Blast_Score=1558, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17552304, Length=316, Percent_Identity=29.4303797468354, Blast_Score=120, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI25144348, Length=294, Percent_Identity=28.9115646258503, Blast_Score=119, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17506623, Length=238, Percent_Identity=29.4117647058824, Blast_Score=108, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6324781, Length=294, Percent_Identity=28.2312925170068, Blast_Score=122, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6325267, Length=297, Percent_Identity=30.976430976431, Blast_Score=117, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6324725, Length=186, Percent_Identity=32.258064516129, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17647877, Length=292, Percent_Identity=29.4520547945205, Blast_Score=119, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136444, Length=246, Percent_Identity=31.7073170731707, Blast_Score=112, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136446, Length=250, Percent_Identity=30.4, Blast_Score=105, Evalue=2e-22,

Paralogues:

None

Copy number: 4233 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): RPOB_MYXXD (Q1D7U3)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_631280.1
- ProteinModelPortal:   Q1D7U3
- STRING:   Q1D7U3
- GeneID:   4102843
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_3077
- TIGR:   MXAN_3077
- eggNOG:   COG0085
- HOGENOM:   HBG285547
- OMA:   QRDLTYA
- PhylomeDB:   Q1D7U3
- ProtClustDB:   PRK00405
- BioCyc:   MXAN246197:MXAN_3077-MONOMER
- HAMAP:   MF_01321
- InterPro:   IPR010243
- InterPro:   IPR019462
- InterPro:   IPR015712
- InterPro:   IPR007120
- InterPro:   IPR007121
- InterPro:   IPR007644
- InterPro:   IPR007642
- InterPro:   IPR007645
- InterPro:   IPR007641
- InterPro:   IPR014724
- Gene3D:   G3DSA:2.40.50.150
- PANTHER:   PTHR20856
- TIGRFAMs:   TIGR02013

Pfam domain/function: PF04563 RNA_pol_Rpb2_1; PF04561 RNA_pol_Rpb2_2; PF04565 RNA_pol_Rpb2_3; PF10385 RNA_pol_Rpb2_45; PF00562 RNA_pol_Rpb2_6; PF04560 RNA_pol_Rpb2_7

EC number: =2.7.7.6

Molecular weight: Translated: 157534; Mature: 157403

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS01166 RNA_POL_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH
FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHEEHEEECCCCHHHHHHH
RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
HHHHHHHEEECCCEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI
EEEEECCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE
HHHHHHEEEEEEECHHHHHHCCEEEECCCCCCHHHHHCCCCCEEEECCCHHHHHHHHHHH
AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEE
DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS
ECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHH
KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
CCCEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHH
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCHHHHHHHHCC
NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY
CCHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCEECCCCCCCCCEEEEECHHHH
ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR
HHHHHCCCCCCCHHHHHCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP
CCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHH
LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ
HHHCCHHHHHHCCCCCEEEEECCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL
CCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCHH
ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV
HHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCC
KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEECCCCCEEE
KKGDILDDELLSTVPYKYWGEISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKG
ECCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLN
CCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEC
PLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIYSDPAFGEFLD
CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEECCCCHHHHHH
KLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFD
HCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCC
QNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEEEHHHC
AAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLES
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
APPERQRSFGGDFLGGGDGEERKTGTEA
CCCHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH
FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHEEHEEECCCCHHHHHHH
RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
HHHHHHHEEECCCEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI
EEEEECCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE
HHHHHHEEEEEEECHHHHHHCCEEEECCCCCCHHHHHCCCCCEEEECCCHHHHHHHHHHH
AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEE
DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS
ECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHH
KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE
CCCEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHH
LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCHHHHHHHHCC
NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY
CCHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCEECCCCCCCCCEEEEECHHHH
ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR
HHHHHCCCCCCCHHHHHCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP
CCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHH
LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ
HHHCCHHHHHHCCCCCEEEEECCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL
CCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCHH
ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV
HHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCC
KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK
CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEECCCCCEEE
KKGDILDDELLSTVPYKYWGEISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKG
ECCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLN
CCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEC
PLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIYSDPAFGEFLD
CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEECCCCHHHHHH
KLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFD
HCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCC
QNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEEEHHHC
AAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLES
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
APPERQRSFGGDFLGGGDGEERKTGTEA
CCCHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA