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The map label for this gene is ydeM [H]

Identifier: 108761184

GI number: 108761184

Start: 2369295

End: 2369735

Strand: Direct

Name: ydeM [H]

Synonym: MXAN_2040

Alternate gene names: 108761184

Gene position: 2369295-2369735 (Clockwise)

Preceding gene: 108760378

Following gene: 108762035

Centisome position: 25.92

GC content: 67.57

Gene sequence:

>441_bases
ATGCGCTACTTTGAGGACTTCCAGCCCGGGGACGTGAGCGAACACGGCCCCCACGTGGTGTCTCGCGAGGAAATCATCGC
CTTCGCGACGCAGTTCGACCCGCAGCCCTTCCACCTGAGCGACGAAGCCGCCCGCGACAGCATCTTCGGCGGGCTGGTGG
CCAGCGGTTGGCACACCGCTTCCCTGTGTCACCGGCTGTTGGTGGACAGCTTCCTGGGACAGACGTCCAGCATGGGCTCG
CCCGGCTTGGATGAGCTGCGCTGGCTCAAGCCCGTGCGTCCGGGGGACACGTTGCACGTGCGGGTGGAGGTCGTCTCCGC
CACGCCGTCGCGCAGCAAGCCGGACCGGGGCGCCATCAAGCTCCGCATGGAGGTGCGCAACCAGAAGGACGAGGTGGTGA
TGACGGAGCTGGCCAACGTGCTCTTCGGCCGGCGTCCGTGA

Upstream 100 bases:

>100_bases
AGCATCAAGTGGAACTCCGAAGTGTTGGACCGCGTCGCTTCGCGCGTGTTCCACCCGGAGGAACTGGAATCCAAGGACAC
GTCGCGTTGAAGTAGCGCCC

Downstream 100 bases:

>100_bases
ACACGAAGGGCCTCCCGTTTCCACTGCGGAAACGTGGAGGCCCTCGGTGCTTCCCTGGCGCGAGCGCGCCGGGGACTACG
CCGCCGTGCGGTGCAGGTAG

Product: MaoC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRYFEDFQPGDVSEHGPHVVSREEIIAFATQFDPQPFHLSDEAARDSIFGGLVASGWHTASLCHRLLVDSFLGQTSSMGS
PGLDELRWLKPVRPGDTLHVRVEVVSATPSRSKPDRGAIKLRMEVRNQKDEVVMTELANVLFGRRP

Sequences:

>Translated_146_residues
MRYFEDFQPGDVSEHGPHVVSREEIIAFATQFDPQPFHLSDEAARDSIFGGLVASGWHTASLCHRLLVDSFLGQTSSMGS
PGLDELRWLKPVRPGDTLHVRVEVVSATPSRSKPDRGAIKLRMEVRNQKDEVVMTELANVLFGRRP
>Mature_146_residues
MRYFEDFQPGDVSEHGPHVVSREEIIAFATQFDPQPFHLSDEAARDSIFGGLVASGWHTASLCHRLLVDSFLGQTSSMGS
PGLDELRWLKPVRPGDTLHVRVEVVSATPSRSKPDRGAIKLRMEVRNQKDEVVMTELANVLFGRRP

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787653, Length=132, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16325; Mature: 16325

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYFEDFQPGDVSEHGPHVVSREEIIAFATQFDPQPFHLSDEAARDSIFGGLVASGWHTA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
SLCHRLLVDSFLGQTSSMGSPGLDELRWLKPVRPGDTLHVRVEVVSATPSRSKPDRGAIK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCEEE
LRMEVRNQKDEVVMTELANVLFGRRP
EEEECCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRYFEDFQPGDVSEHGPHVVSREEIIAFATQFDPQPFHLSDEAARDSIFGGLVASGWHTA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
SLCHRLLVDSFLGQTSSMGSPGLDELRWLKPVRPGDTLHVRVEVVSATPSRSKPDRGAIK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCEEE
LRMEVRNQKDEVVMTELANVLFGRRP
EEEECCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]