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The map label for this gene is lptD [H]

Identifier: 108760498

GI number: 108760498

Start: 3159451

End: 3162087

Strand: Direct

Name: lptD [H]

Synonym: MXAN_2708

Alternate gene names: 108760498

Gene position: 3159451-3162087 (Clockwise)

Preceding gene: 108762563

Following gene: 108758632

Centisome position: 34.57

GC content: 68.22

Gene sequence:

>2637_bases
ATGAGCTTCTTCGTTCCGCTCGCCGCCGCGCTGCTGGTCTCCACGTCGCAGGTGCCACTCGCCACCCCGTTGGCTTTGCC
CAACGGTGAGACGGCGCAGCTGGCTGCGGACCTGGTCGTCTACGAAGCGGACACGAAGGTCGTCACCGCGCGCGGCAACG
CCGTGCTGCGCACGGAGACGATGCAGCTTCGCGCCGACGAGGTGACGTACGACGAGGTGAACCAGCTCGTCACCGCCTCG
GGCGGTGTGATGTTCGTGGGCCCCAGCGGCCTGGCCGCGGTCGCCGACACCGCGAAGATGGATGTGCGCACCTACGAGGC
GAACCTCGAGGGCGGCCTCTTCATGCAGAAGCAGGGCGTCACCCAGGAGGCCCTGTTCACGGCGAAGACGCCCCAGGAGC
TGCGGGCCATGGGGGAGACGCCCCTCCTCATGAGCGGCTCGCGCATCCGCCGGACGGGGGAGAACACCTTCCTCGTGGAG
GACCTGGCCTTCACGCCGTGCAACTGCAGCCCGGGTGAGCCTGGCTGGCGCATGGAGGCCTCGTCGGCCACCGTCGTCCT
GGGCGAGCGCGCCACGATGACGCTGCCCGTGGTGTACGTGAAGTCCGTGCCCGTGTTCGCGCTGCCGTGGCTCTACATGC
CGCTGTCCCAGCGGCGCACCGGCCTGCTGCTGCCCAAGCCCACCTTCTCCTCGCTCAATGGCTTCTCCCTGGAGCAGCCC
CTCTTCATCACACTGGGGCAGAGCTACGACGTGACGCTCACGCCAGGGTACTTCAGCGGCGGCTACGAACTGCATACCGT
TCCCGGCGCCACCGAGCAGGTTCGGGAGCCGCGCTACCTGGGCGTGAAGGGGCCGCGCCTGCTCACCGAGTTCCGTTATG
CGCCCAGCGAACGGACCCGGGGACGGGCGACGCTGGGGTTCCTCTACGACCTCCGGCCCATCCGGGATCCGCGCAGCTTC
ATGTTCTACCGGCGGACGGAGGACGGTGTCGCCTCGCCTGAGTTCGTCGATGAGCGGCGAGGACTCCGGGGCGAGGCGTC
CTGGCAACACACCCAGGACATGGGGGGAGGGTGGCACAACCGCGTCGATGCTTCGTTCGTCTCCGATGGCAACTACACCC
GTGACCTCACGGCCGACCTCATCACCCGCGAGTTCACCTACCTGCGCAGCACGGGGACGGTGTTCCAACGCCAGGACGAC
CTCTATGCGGGCCTCGACGTGGCGCTGCGCCAGGACATCCGGTGGGGGTACCGCTTCTTCCAGGACAACCGCATCCCGGC
GGCCACGGACCCGGCGCGCCCGGACCTGAAAGGCCCCAACACGTTCCAACGCTTGCCGGCCATCACCCTGGCCCTGCCGG
AGCGGCCCGTGCTGGGCGGAATCATGGGGGGCCTGTCGGTTCAGTACCTGCGGCTCGCGCCCCTGCGAGGCGGGTACGGC
GACGAGGGGATCGACGGCATCTTCCGGGCCGACGGGTTCCATGTCCCGTTCGGCTCTGCCGGGTGGCCGTTTCCCGCGGA
CACCACGCAGTCTGATGGCATCTTCAATTCGAACGACCGCGAAGCCCGCGACCGCGTGGACTTCTTCCCACGCCTGTCGA
CGTCCTTCGGTCTGGGCAGTCTGATGCGCGTGTCGCCGTCGCTGGGAATGCGCCAGGACGTGTGGCTGGGCGAGGTGTCG
GGCCGGACGTGGCAGCGGGGGTACCCCATCGCTGGGTTGCTGCTCGAAAGCCAGGTGGCGCGCGTCTTCGAGGGCCGTGA
GACGAGCTTCCGCCATGCCATCACCCCCTCGCTGGAGCTGCGCTACGTGCCGGGCGGGTGGGGCCGTCTTCCCTCGGCCG
GGGCCTCCGGGGAGAACCTGGCCCGCCCCTATGACGAAGTGGATGCCGCGGTGCCGTTCCAGAGCGACGGCCGCACCCGG
GGCTTCCTCCACGCGGTGCTCGCCGTGGACCAGACGCTGCGCTTCAAGCGTGGCAACGACATCCGCGAGCCGCTGCGCCT
GCGCATCGGACAGGGCTTCGACCTCACCCGACACGTGCCCGCGGCGGGGAAGGTGGACGATCCGGGGCCCGTGCTACGCG
ACACCTTCGCCCGCCTCAGCGCCACCGCCGGAATCTTCACGGCCGCGGGCACCGTTCGCTACGACCCCAACGCGGGCCGC
ATCTCTGGTCTCTCCGCGGAGGTGAATGTCGACAACGGCAAGGGGCACGCCGTGTACGCGCGCTTCGACGACCTGCTGTG
GACCGGGGGAGATGCGCTCAACCGCGGCGCGGATCCCCGTTCCGTGGGGCCCGATGTGCTCCGCCGCTCGCTGGATACCT
TGGTAGGCGGACTATCCCGAGTAGAGCCCGGCTTCCCTCCGGCCGAACGGGCTCAAGCCCTCATCGCGGGTACGCGTTTG
AAGCTCGGATTTGGGCTGGGAGTGCGGTACGAAGCAATTGTGCAACCGCTTTACCAGGATCCAATAACTCGAGAAAATCG
CCCTCTTGCTCAGCAGACGTTCGGCCTCTCGTATGGGCCTGCATGCGACTGTTGGCGGGTAGAAGGGGTGGTGACGTCGC
GGCGAGATTTGGGGCTGGAATTCTCCGGCATCAACCTCATTGTGGCGGATTTCGGATCCTTTGGTTCCGGAGGCTAG

Upstream 100 bases:

>100_bases
CCCGCCAGGAGGGCAACGTCATTTCATTGGACTTCCAGCGCACAGGCCGGTGAAAAGAGCGGGCCGCTCGGCCTGGGCGC
GGCATACCCTGCACCCCTGA

Downstream 100 bases:

>100_bases
GAATCACCAGCGGTGGGTGGTGGTTCCTCCAACCCCGAAACAGCCAGGAGAAGTACTTCGTGTCGGACCTCGGAAAACGA
ATTGGGCAGCGCATCCGCGA

Product: putative organic solvent tolerance protein

Products: NA

Alternate protein names: Organic solvent tolerance protein [H]

Number of amino acids: Translated: 878; Mature: 877

Protein sequence:

>878_residues
MSFFVPLAAALLVSTSQVPLATPLALPNGETAQLAADLVVYEADTKVVTARGNAVLRTETMQLRADEVTYDEVNQLVTAS
GGVMFVGPSGLAAVADTAKMDVRTYEANLEGGLFMQKQGVTQEALFTAKTPQELRAMGETPLLMSGSRIRRTGENTFLVE
DLAFTPCNCSPGEPGWRMEASSATVVLGERATMTLPVVYVKSVPVFALPWLYMPLSQRRTGLLLPKPTFSSLNGFSLEQP
LFITLGQSYDVTLTPGYFSGGYELHTVPGATEQVREPRYLGVKGPRLLTEFRYAPSERTRGRATLGFLYDLRPIRDPRSF
MFYRRTEDGVASPEFVDERRGLRGEASWQHTQDMGGGWHNRVDASFVSDGNYTRDLTADLITREFTYLRSTGTVFQRQDD
LYAGLDVALRQDIRWGYRFFQDNRIPAATDPARPDLKGPNTFQRLPAITLALPERPVLGGIMGGLSVQYLRLAPLRGGYG
DEGIDGIFRADGFHVPFGSAGWPFPADTTQSDGIFNSNDREARDRVDFFPRLSTSFGLGSLMRVSPSLGMRQDVWLGEVS
GRTWQRGYPIAGLLLESQVARVFEGRETSFRHAITPSLELRYVPGGWGRLPSAGASGENLARPYDEVDAAVPFQSDGRTR
GFLHAVLAVDQTLRFKRGNDIREPLRLRIGQGFDLTRHVPAAGKVDDPGPVLRDTFARLSATAGIFTAAGTVRYDPNAGR
ISGLSAEVNVDNGKGHAVYARFDDLLWTGGDALNRGADPRSVGPDVLRRSLDTLVGGLSRVEPGFPPAERAQALIAGTRL
KLGFGLGVRYEAIVQPLYQDPITRENRPLAQQTFGLSYGPACDCWRVEGVVTSRRDLGLEFSGINLIVADFGSFGSGG

Sequences:

>Translated_878_residues
MSFFVPLAAALLVSTSQVPLATPLALPNGETAQLAADLVVYEADTKVVTARGNAVLRTETMQLRADEVTYDEVNQLVTAS
GGVMFVGPSGLAAVADTAKMDVRTYEANLEGGLFMQKQGVTQEALFTAKTPQELRAMGETPLLMSGSRIRRTGENTFLVE
DLAFTPCNCSPGEPGWRMEASSATVVLGERATMTLPVVYVKSVPVFALPWLYMPLSQRRTGLLLPKPTFSSLNGFSLEQP
LFITLGQSYDVTLTPGYFSGGYELHTVPGATEQVREPRYLGVKGPRLLTEFRYAPSERTRGRATLGFLYDLRPIRDPRSF
MFYRRTEDGVASPEFVDERRGLRGEASWQHTQDMGGGWHNRVDASFVSDGNYTRDLTADLITREFTYLRSTGTVFQRQDD
LYAGLDVALRQDIRWGYRFFQDNRIPAATDPARPDLKGPNTFQRLPAITLALPERPVLGGIMGGLSVQYLRLAPLRGGYG
DEGIDGIFRADGFHVPFGSAGWPFPADTTQSDGIFNSNDREARDRVDFFPRLSTSFGLGSLMRVSPSLGMRQDVWLGEVS
GRTWQRGYPIAGLLLESQVARVFEGRETSFRHAITPSLELRYVPGGWGRLPSAGASGENLARPYDEVDAAVPFQSDGRTR
GFLHAVLAVDQTLRFKRGNDIREPLRLRIGQGFDLTRHVPAAGKVDDPGPVLRDTFARLSATAGIFTAAGTVRYDPNAGR
ISGLSAEVNVDNGKGHAVYARFDDLLWTGGDALNRGADPRSVGPDVLRRSLDTLVGGLSRVEPGFPPAERAQALIAGTRL
KLGFGLGVRYEAIVQPLYQDPITRENRPLAQQTFGLSYGPACDCWRVEGVVTSRRDLGLEFSGINLIVADFGSFGSGG
>Mature_877_residues
SFFVPLAAALLVSTSQVPLATPLALPNGETAQLAADLVVYEADTKVVTARGNAVLRTETMQLRADEVTYDEVNQLVTASG
GVMFVGPSGLAAVADTAKMDVRTYEANLEGGLFMQKQGVTQEALFTAKTPQELRAMGETPLLMSGSRIRRTGENTFLVED
LAFTPCNCSPGEPGWRMEASSATVVLGERATMTLPVVYVKSVPVFALPWLYMPLSQRRTGLLLPKPTFSSLNGFSLEQPL
FITLGQSYDVTLTPGYFSGGYELHTVPGATEQVREPRYLGVKGPRLLTEFRYAPSERTRGRATLGFLYDLRPIRDPRSFM
FYRRTEDGVASPEFVDERRGLRGEASWQHTQDMGGGWHNRVDASFVSDGNYTRDLTADLITREFTYLRSTGTVFQRQDDL
YAGLDVALRQDIRWGYRFFQDNRIPAATDPARPDLKGPNTFQRLPAITLALPERPVLGGIMGGLSVQYLRLAPLRGGYGD
EGIDGIFRADGFHVPFGSAGWPFPADTTQSDGIFNSNDREARDRVDFFPRLSTSFGLGSLMRVSPSLGMRQDVWLGEVSG
RTWQRGYPIAGLLLESQVARVFEGRETSFRHAITPSLELRYVPGGWGRLPSAGASGENLARPYDEVDAAVPFQSDGRTRG
FLHAVLAVDQTLRFKRGNDIREPLRLRIGQGFDLTRHVPAAGKVDDPGPVLRDTFARLSATAGIFTAAGTVRYDPNAGRI
SGLSAEVNVDNGKGHAVYARFDDLLWTGGDALNRGADPRSVGPDVLRRSLDTLVGGLSRVEPGFPPAERAQALIAGTRLK
LGFGLGVRYEAIVQPLYQDPITRENRPLAQQTFGLSYGPACDCWRVEGVVTSRRDLGLEFSGINLIVADFGSFGSGG

Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]

COG id: COG1452

COG function: function code M; Organic solvent tolerance protein OstA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptD family [H]

Homologues:

None

Paralogues:

None

Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020889
- InterPro:   IPR005653
- InterPro:   IPR007543 [H]

Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]

EC number: NA

Molecular weight: Translated: 95986; Mature: 95854

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFVPLAAALLVSTSQVPLATPLALPNGETAQLAADLVVYEADTKVVTARGNAVLRTET
CCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHEEEEEEEEECCCEEEEECCCEEEEEEE
MQLRADEVTYDEVNQLVTASGGVMFVGPSGLAAVADTAKMDVRTYEANLEGGLFMQKQGV
EEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHEEEEEECCCCCCEEEECCCC
TQEALFTAKTPQELRAMGETPLLMSGSRIRRTGENTFLVEDLAFTPCNCSPGEPGWRMEA
CHHHHEECCCHHHHHHCCCCCEEECCCHHEECCCCEEEEEECEECCCCCCCCCCCCEEEC
SSATVVLGERATMTLPVVYVKSVPVFALPWLYMPLSQRRTGLLLPKPTFSSLNGFSLEQP
CCEEEEEECCCEEEEEEEEECCCCHHHHHHHHCCHHCCCCEEECCCCCCCCCCCCCCCCC
LFITLGQSYDVTLTPGYFSGGYELHTVPGATEQVREPRYLGVKGPRLLTEFRYAPSERTR
EEEEECCCEEEEECCCCCCCCEEEEECCCCHHHHCCCCEECCCCCHHHHHHHCCCCCCCC
GRATLGFLYDLRPIRDPRSFMFYRRTEDGVASPEFVDERRGLRGEASWQHTQDMGGGWHN
CCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCC
RVDASFVSDGNYTRDLTADLITREFTYLRSTGTVFQRQDDLYAGLDVALRQDIRWGYRFF
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
QDNRIPAATDPARPDLKGPNTFQRLPAITLALPERPVLGGIMGGLSVQYLRLAPLRGGYG
CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHHHHCCEEEEEEEECCCCCCC
DEGIDGIFRADGFHVPFGSAGWPFPADTTQSDGIFNSNDREARDRVDFFPRLSTSFGLGS
CCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
LMRVSPSLGMRQDVWLGEVSGRTWQRGYPIAGLLLESQVARVFEGRETSFRHAITPSLEL
HEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCEEE
RYVPGGWGRLPSAGASGENLARPYDEVDAAVPFQSDGRTRGFLHAVLAVDQTLRFKRGND
EECCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
IREPLRLRIGQGFDLTRHVPAAGKVDDPGPVLRDTFARLSATAGIFTAAGTVRYDPNAGR
HHHHHHHHCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEECCCCCC
ISGLSAEVNVDNGKGHAVYARFDDLLWTGGDALNRGADPRSVGPDVLRRSLDTLVGGLSR
EECCEEEEEECCCCCCEEEEEECCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VEPGFPPAERAQALIAGTRLKLGFGLGVRYEAIVQPLYQDPITRENRPLAQQTFGLSYGP
CCCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC
ACDCWRVEGVVTSRRDLGLEFSGINLIVADFGSFGSGG
CCCCEEECCEEECHHHCCEEECCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SFFVPLAAALLVSTSQVPLATPLALPNGETAQLAADLVVYEADTKVVTARGNAVLRTET
CCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHEEEEEEEEECCCEEEEECCCEEEEEEE
MQLRADEVTYDEVNQLVTASGGVMFVGPSGLAAVADTAKMDVRTYEANLEGGLFMQKQGV
EEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHEEEEEECCCCCCEEEECCCC
TQEALFTAKTPQELRAMGETPLLMSGSRIRRTGENTFLVEDLAFTPCNCSPGEPGWRMEA
CHHHHEECCCHHHHHHCCCCCEEECCCHHEECCCCEEEEEECEECCCCCCCCCCCCEEEC
SSATVVLGERATMTLPVVYVKSVPVFALPWLYMPLSQRRTGLLLPKPTFSSLNGFSLEQP
CCEEEEEECCCEEEEEEEEECCCCHHHHHHHHCCHHCCCCEEECCCCCCCCCCCCCCCCC
LFITLGQSYDVTLTPGYFSGGYELHTVPGATEQVREPRYLGVKGPRLLTEFRYAPSERTR
EEEEECCCEEEEECCCCCCCCEEEEECCCCHHHHCCCCEECCCCCHHHHHHHCCCCCCCC
GRATLGFLYDLRPIRDPRSFMFYRRTEDGVASPEFVDERRGLRGEASWQHTQDMGGGWHN
CCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCC
RVDASFVSDGNYTRDLTADLITREFTYLRSTGTVFQRQDDLYAGLDVALRQDIRWGYRFF
CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
QDNRIPAATDPARPDLKGPNTFQRLPAITLALPERPVLGGIMGGLSVQYLRLAPLRGGYG
CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHHHHCCEEEEEEEECCCCCCC
DEGIDGIFRADGFHVPFGSAGWPFPADTTQSDGIFNSNDREARDRVDFFPRLSTSFGLGS
CCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
LMRVSPSLGMRQDVWLGEVSGRTWQRGYPIAGLLLESQVARVFEGRETSFRHAITPSLEL
HEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCEEE
RYVPGGWGRLPSAGASGENLARPYDEVDAAVPFQSDGRTRGFLHAVLAVDQTLRFKRGND
EECCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
IREPLRLRIGQGFDLTRHVPAAGKVDDPGPVLRDTFARLSATAGIFTAAGTVRYDPNAGR
HHHHHHHHCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEECCCCCC
ISGLSAEVNVDNGKGHAVYARFDDLLWTGGDALNRGADPRSVGPDVLRRSLDTLVGGLSR
EECCEEEEEECCCCCCEEEEEECCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VEPGFPPAERAQALIAGTRLKLGFGLGVRYEAIVQPLYQDPITRENRPLAQQTFGLSYGP
CCCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC
ACDCWRVEGVVTSRRDLGLEFSGINLIVADFGSFGSGG
CCCCEEECCEEECHHHCCEEECCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA