| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108760465
Identifier: 108760465
GI number: 108760465
Start: 3227577
End: 3228839
Strand: Direct
Name: 108760465
Synonym: MXAN_2775
Alternate gene names: NA
Gene position: 3227577-3228839 (Clockwise)
Preceding gene: 108758586
Following gene: 108759589
Centisome position: 35.31
GC content: 69.99
Gene sequence:
>1263_bases ATGGCCTCGGTCAAAGGAATTGCGAACGGGGGGAACACGCGCAAGCGCGTCCAGCAAGAGACGCTCCCCCAGGATGTACA GGCGCAGGAATTGGAACGCTTCCACGCGCAGCGCGAGGCGCTCATCGCCAACGTTGCGCAGTCCGGAGCGAGGCTCCTCA CGGTCGCGGCCCGGCGGTTGCCGACCGTGCTGACGCGGCCCGTGCTCGAGGGGGGAAGCCGCATTCTCCAGGACACCACC CTCTACCTCCAGGAAGCGTCGATGGAGGAGTGGCTCCGCGCCGCGCAAAAAAAGCTGAAGGCGAGGCCCGGGAGCTCCAT CCTTGGGCTGCTGGGCATTGGACTGCTCGCTGGGCGGCTGCTCCGTAAGGTGGCGGAGAAGGGGGGAGCCGAGTCCTTCC AAGACCGATTGCGCGAAAGCATGTTCCTGGCGACCCATGGTGGAGTGGGGCGGCCCCCAGCCGCCGCACGTCAGCGATTG CTCAGGGGTGGCGCGGGTGGAGCGCCGACGCAAGGAGGCGTGGCCGAGGGCTTCAAGGAGCGATTGCGCGAAGGCATGTC CATGGCGACTCTTGGTGGTGGAGTGGGGCGGCCCCCGGCCGCGATGCGCCTGCGCCTGCAGAAGGCTGGAGGGTCGAAGC AGGGGGCGCCACGCAAGCGCGACGTGAAGGAGCGAGCGCCGCGCGAGCCCGCGGTGAGGGCGAAGGAAGTGGCGCGAGAC GTCGCCGAGGGCGCCCGGGACGCAACACGCGCCTTCGACGAGGTCACCAAGAGCGCCCAGGGTGCAACACGCGCGTTCGC AGAGGCGACCCGGGGCGCAGCGCGCAAGGGCGGTGAGGCTGCGAGCGGCGCGCGAAAGGCGATGAAGGACACAACGCGCG AGGTCGCTCGAGGGGCCGCGAAGCCAGGGGGAAAGAAGTCGCCGGCCAGCACCGAGGCCACGTCCACGAATGCGCCCTCA CAAGCGCCGAGCGGCTACCTCGGGATGGGGGCCTTCCCCGTCCGGCTGCCGGAGAAGCTCGCGAAGACCCATGGCACCCA GAGCGGCCTCAAGGTCGCGAGCGTGGAGCCGGATGGCCCGGCCGAGGAGGCGGGGCTGCATCCGGGTGACACGCTGCTCA CGCTCGAGGGGCAGCCATTGCGAGAGGTGGATGACCTGGTCGCGCAGCTGCCTCCGGAACGTGTGGGCCAGACCGTGCAC GCAAAGGTGCTGCGCGCCGGGGCTGCCAAGGTCATCGACCTCACCGTTGGCGCGCACCCCTGA
Upstream 100 bases:
>100_bases CCGCCTCACCTCCCTGAACTTCGCCGCCTGTCGTGTCTACGTTCTGCATGGACAACGCATGCGCGTCCGGCACGCGTGTG CGTCAGCGGTGTGAGTACCC
Downstream 100 bases:
>100_bases GCCGGGGGGCGCGAGCGCTCATGCGGCTCACGATGACTTGACGGGGCCGGAGGAGGACCTGCGGCGCGAGGAGGATGTGC GGGGCCTGGGCGCTCCCTGC
Product: PDZ domain-containing protein
Products: NA
Alternate protein names: PDZ/DHR/GLGF Domain-Containing Protein; S1C Family Peptidase; PDZ Domain-Containing Protein
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MASVKGIANGGNTRKRVQQETLPQDVQAQELERFHAQREALIANVAQSGARLLTVAARRLPTVLTRPVLEGGSRILQDTT LYLQEASMEEWLRAAQKKLKARPGSSILGLLGIGLLAGRLLRKVAEKGGAESFQDRLRESMFLATHGGVGRPPAAARQRL LRGGAGGAPTQGGVAEGFKERLREGMSMATLGGGVGRPPAAMRLRLQKAGGSKQGAPRKRDVKERAPREPAVRAKEVARD VAEGARDATRAFDEVTKSAQGATRAFAEATRGAARKGGEAASGARKAMKDTTREVARGAAKPGGKKSPASTEATSTNAPS QAPSGYLGMGAFPVRLPEKLAKTHGTQSGLKVASVEPDGPAEEAGLHPGDTLLTLEGQPLREVDDLVAQLPPERVGQTVH AKVLRAGAAKVIDLTVGAHP
Sequences:
>Translated_420_residues MASVKGIANGGNTRKRVQQETLPQDVQAQELERFHAQREALIANVAQSGARLLTVAARRLPTVLTRPVLEGGSRILQDTT LYLQEASMEEWLRAAQKKLKARPGSSILGLLGIGLLAGRLLRKVAEKGGAESFQDRLRESMFLATHGGVGRPPAAARQRL LRGGAGGAPTQGGVAEGFKERLREGMSMATLGGGVGRPPAAMRLRLQKAGGSKQGAPRKRDVKERAPREPAVRAKEVARD VAEGARDATRAFDEVTKSAQGATRAFAEATRGAARKGGEAASGARKAMKDTTREVARGAAKPGGKKSPASTEATSTNAPS QAPSGYLGMGAFPVRLPEKLAKTHGTQSGLKVASVEPDGPAEEAGLHPGDTLLTLEGQPLREVDDLVAQLPPERVGQTVH AKVLRAGAAKVIDLTVGAHP >Mature_419_residues ASVKGIANGGNTRKRVQQETLPQDVQAQELERFHAQREALIANVAQSGARLLTVAARRLPTVLTRPVLEGGSRILQDTTL YLQEASMEEWLRAAQKKLKARPGSSILGLLGIGLLAGRLLRKVAEKGGAESFQDRLRESMFLATHGGVGRPPAAARQRLL RGGAGGAPTQGGVAEGFKERLREGMSMATLGGGVGRPPAAMRLRLQKAGGSKQGAPRKRDVKERAPREPAVRAKEVARDV AEGARDATRAFDEVTKSAQGATRAFAEATRGAARKGGEAASGARKAMKDTTREVARGAAKPGGKKSPASTEATSTNAPSQ APSGYLGMGAFPVRLPEKLAKTHGTQSGLKVASVEPDGPAEEAGLHPGDTLLTLEGQPLREVDDLVAQLPPERVGQTVHA KVLRAGAAKVIDLTVGAHP
Specific function: Unknown
COG id: COG0265
COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43978; Mature: 43847
Theoretical pI: Translated: 11.28; Mature: 11.28
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVKGIANGGNTRKRVQQETLPQDVQAQELERFHAQREALIANVAQSGARLLTVAARRL CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH PTVLTRPVLEGGSRILQDTTLYLQEASMEEWLRAAQKKLKARPGSSILGLLGIGLLAGRL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LRKVAEKGGAESFQDRLRESMFLATHGGVGRPPAAARQRLLRGGAGGAPTQGGVAEGFKE HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH RLREGMSMATLGGGVGRPPAAMRLRLQKAGGSKQGAPRKRDVKERAPREPAVRAKEVARD HHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHH VAEGARDATRAFDEVTKSAQGATRAFAEATRGAARKGGEAASGARKAMKDTTREVARGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC KPGGKKSPASTEATSTNAPSQAPSGYLGMGAFPVRLPEKLAKTHGTQSGLKVASVEPDGP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC AEEAGLHPGDTLLTLEGQPLREVDDLVAQLPPERVGQTVHAKVLRAGAAKVIDLTVGAHP HHHCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEEECCCCC >Mature Secondary Structure ASVKGIANGGNTRKRVQQETLPQDVQAQELERFHAQREALIANVAQSGARLLTVAARRL CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH PTVLTRPVLEGGSRILQDTTLYLQEASMEEWLRAAQKKLKARPGSSILGLLGIGLLAGRL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LRKVAEKGGAESFQDRLRESMFLATHGGVGRPPAAARQRLLRGGAGGAPTQGGVAEGFKE HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH RLREGMSMATLGGGVGRPPAAMRLRLQKAGGSKQGAPRKRDVKERAPREPAVRAKEVARD HHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHH VAEGARDATRAFDEVTKSAQGATRAFAEATRGAARKGGEAASGARKAMKDTTREVARGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC KPGGKKSPASTEATSTNAPSQAPSGYLGMGAFPVRLPEKLAKTHGTQSGLKVASVEPDGP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC AEEAGLHPGDTLLTLEGQPLREVDDLVAQLPPERVGQTVHAKVLRAGAAKVIDLTVGAHP HHHCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA