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The map label for this gene is rhaS [C]

Identifier: 108760281

GI number: 108760281

Start: 449257

End: 450111

Strand: Reverse

Name: rhaS [C]

Synonym: MXAN_0387

Alternate gene names: 108760281

Gene position: 450111-449257 (Counterclockwise)

Preceding gene: 108758203

Following gene: 108761077

Centisome position: 4.92

GC content: 70.53

Gene sequence:

>855_bases
ATGGACGCAATGGCCGCACAGGGCCTGACAGGCTGTGCACGGGCTGAAGACAGGGACGCGATGGCGGAGGACGCACAGCA
GCAGGGCTACACCCAGTGGGCACCGCCTATCGAGATGGCGGATGCGGTGGACGCGTTCTGGCAGTTCTGGGTGCCCCGAA
AGCCCCACGACGTCCCCCTCCCCCGGCAGCACCGGGTCCTTCCGGATGGCTGCACCGACCTCATCTTCGGATTCCAACAC
GCCCCAGGCCCGGTGTGGCTGGCCGCACCCCGGCTGGCCGTCGTCGGCCCCATGAAGCGCTTCATCCTCGTCGACCTCGA
GCCCGGCGGGGTGAGCCTGGGCGTCAGGCTCCGCCCTGGCTGGGCGCAGGCCCTGCTGGGTGTCAGTCCGCGTGAACTCT
GCGGACTCAACGTCTCCGCCCAGGACTGCTCGCCCGCCCTCATGCAGTTTCAGCGGCGGATGGAAGACTGCGCCTCGCCC
GCCCAGGCCATGGCCCTGCTCCAGCGCACCATCGCCCGACGCTGGGCTTCGTTCCGGAGCATGGCGAAGCCGCGCGCCGT
CCAGGCCCTGGGACACCTCCAAGCCTCGTCGGGACAGGTGCGCATGGCCGCGCTCGCTCGCGAGCTGGGCGTGAGTGAGC
GCACCCTGCACCGGGACATCCTGGACGAAGCCGGCGTACCGCCGAAGCTGCTCGCGCGCGTGCTGCGCCTCCAGCGGGCG
GTGTCCCTGCTGCGCTCCCGTGAGGGCACGGACCTGTGTGACGTCGCGCTCGAATGCGGCTACGCGGACCAGGCGCATTT
GTCACGAGACGTGCGGGAACTGGCCGGCGTGTCGCCCACCGCACTCGTGGGTTGA

Upstream 100 bases:

>100_bases
GCGAGCGCATCGATGCCGATGACAGTATCGTTCAGGGTGTCGGGATTCATCGGGCTCGTCAGGTTCGCCGTCTTCATGGC
CACCGCTCCTTTCATGGGAA

Downstream 100 bases:

>100_bases
GCGCTGTCCGATTCCTTCAAGACAGGCCCGTGCCATCCGTGTGACGACGCACTCACACAGACGTCCCACTGACCAACAGG
AGTCCGCCATGAAGCTCGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDAMAAQGLTGCARAEDRDAMAEDAQQQGYTQWAPPIEMADAVDAFWQFWVPRKPHDVPLPRQHRVLPDGCTDLIFGFQH
APGPVWLAAPRLAVVGPMKRFILVDLEPGGVSLGVRLRPGWAQALLGVSPRELCGLNVSAQDCSPALMQFQRRMEDCASP
AQAMALLQRTIARRWASFRSMAKPRAVQALGHLQASSGQVRMAALARELGVSERTLHRDILDEAGVPPKLLARVLRLQRA
VSLLRSREGTDLCDVALECGYADQAHLSRDVRELAGVSPTALVG

Sequences:

>Translated_284_residues
MDAMAAQGLTGCARAEDRDAMAEDAQQQGYTQWAPPIEMADAVDAFWQFWVPRKPHDVPLPRQHRVLPDGCTDLIFGFQH
APGPVWLAAPRLAVVGPMKRFILVDLEPGGVSLGVRLRPGWAQALLGVSPRELCGLNVSAQDCSPALMQFQRRMEDCASP
AQAMALLQRTIARRWASFRSMAKPRAVQALGHLQASSGQVRMAALARELGVSERTLHRDILDEAGVPPKLLARVLRLQRA
VSLLRSREGTDLCDVALECGYADQAHLSRDVRELAGVSPTALVG
>Mature_284_residues
MDAMAAQGLTGCARAEDRDAMAEDAQQQGYTQWAPPIEMADAVDAFWQFWVPRKPHDVPLPRQHRVLPDGCTDLIFGFQH
APGPVWLAAPRLAVVGPMKRFILVDLEPGGVSLGVRLRPGWAQALLGVSPRELCGLNVSAQDCSPALMQFQRRMEDCASP
AQAMALLQRTIARRWASFRSMAKPRAVQALGHLQASSGQVRMAALARELGVSERTLHRDILDEAGVPPKLLARVLRLQRA
VSLLRSREGTDLCDVALECGYADQAHLSRDVRELAGVSPTALVG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30980; Mature: 30980

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMAAQGLTGCARAEDRDAMAEDAQQQGYTQWAPPIEMADAVDAFWQFWVPRKPHDVPL
CCCCHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PRQHRVLPDGCTDLIFGFQHAPGPVWLAAPRLAVVGPMKRFILVDLEPGGVSLGVRLRPG
CCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEEEECCCCEEEEEEECCC
WAQALLGVSPRELCGLNVSAQDCSPALMQFQRRMEDCASPAQAMALLQRTIARRWASFRS
HHHHHHCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MAKPRAVQALGHLQASSGQVRMAALARELGVSERTLHRDILDEAGVPPKLLARVLRLQRA
HCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VSLLRSREGTDLCDVALECGYADQAHLSRDVRELAGVSPTALVG
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MDAMAAQGLTGCARAEDRDAMAEDAQQQGYTQWAPPIEMADAVDAFWQFWVPRKPHDVPL
CCCCHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PRQHRVLPDGCTDLIFGFQHAPGPVWLAAPRLAVVGPMKRFILVDLEPGGVSLGVRLRPG
CCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEEEECCCCEEEEEEECCC
WAQALLGVSPRELCGLNVSAQDCSPALMQFQRRMEDCASPAQAMALLQRTIARRWASFRS
HHHHHHCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MAKPRAVQALGHLQASSGQVRMAALARELGVSERTLHRDILDEAGVPPKLLARVLRLQRA
HCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VSLLRSREGTDLCDVALECGYADQAHLSRDVRELAGVSPTALVG
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7517396 [H]