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The map label for this gene is dgdR [H]

Identifier: 108760178

GI number: 108760178

Start: 2042567

End: 2043448

Strand: Reverse

Name: dgdR [H]

Synonym: MXAN_1726

Alternate gene names: 108760178

Gene position: 2043448-2042567 (Counterclockwise)

Preceding gene: 108761612

Following gene: 108758388

Centisome position: 22.36

GC content: 65.87

Gene sequence:

>882_bases
ATGCTCGATCTCTTCTTGCTGCGAAGCTTCGTCGCGGTCGTCGAAACGGGAAATTTCACCCGGGCCGGCGAGCGCCTGCA
CCTGACCCAATCGACCGTCAGCCAGCAGCTCATTCGCCTTGAGCAGAGCCTGGGTTGCCGACTGCTGAACCGCAGCCAGC
GTCATGTAGTGCCCACAGAAGAGGGGGAGCGCCTGCTTGGCTATGCGCAGCGGATCCTTCGCCTAGCCGAGGAGGCGACC
GTTGAGTTGAACCCCGGCGGCAGCGGCGGTGTGTTGCGATTAGGTGTGCCCGAGGATCTCGGGGGCGAAGCGCTGATGCC
GCTGCTTACGCGCTTCGCAGCCGAGCGACCGCGCCTGCGTCTGGAGGTCGAGTGTGGGTTGAGCCACCACCTCTTGCGCC
TCTACCGCAACGGCGAGCTCGATCTGTTGCTGGTCAAGCAGTGGGGCGCCGACAGCGATTCCCATGCGCGCTGGGCGGAA
TCCCTGTGCTGGATCGACAGCGCGACGCAGCCGGTGACGGCGAGGTACGAGGGTGGCACGGATGCTCTGCCGCTCGTGGC
GTTCCCCGTGGGGGCGCTCTATCGGCAGGACATGATCCACGCGTTGGAGAGCCGCGGGCGTGCGTGGCGGATTGGCTACT
CGAGTGCCAGCCTCGCAAGCCTCTGTGCAGCGGTGAGCGCTGGGCTCGGCGTCAGTCTGTTGCCTGCGAGTAGCGTGCAG
GCCGGCCATCGCGTGCTGGGCGAAAAGGATGGATTTCCTGTCGTAGACGGGCTCGAGCTTGCCCTCTACGCCCGTTCGAA
TCTCGGCGCCGTCGGCCGTACCCTGCGCGACGAGCTGTCCGACCTTTGCACCCAGCGTGCAGAAGCTGCGGTTCGTGCTT
GA

Upstream 100 bases:

>100_bases
GCACTAATCCCCTGCCATTTCATACGAGAACGAAATACTAGAGTGACTCATAGTGGAGTTCTGAATAGTTTGACCGAGAG
CCCATCGTGGAGACACCCGC

Downstream 100 bases:

>100_bases
AGACGTGGTGAACGGGAACCACGCTGCTGGGCGTGGCTGGCGACATTGACCGAGCGCGCCGCAGATATCGCCAGCCGCGC
AGAGGCTCACGACGCCTTCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLDLFLLRSFVAVVETGNFTRAGERLHLTQSTVSQQLIRLEQSLGCRLLNRSQRHVVPTEEGERLLGYAQRILRLAEEAT
VELNPGGSGGVLRLGVPEDLGGEALMPLLTRFAAERPRLRLEVECGLSHHLLRLYRNGELDLLLVKQWGADSDSHARWAE
SLCWIDSATQPVTARYEGGTDALPLVAFPVGALYRQDMIHALESRGRAWRIGYSSASLASLCAAVSAGLGVSLLPASSVQ
AGHRVLGEKDGFPVVDGLELALYARSNLGAVGRTLRDELSDLCTQRAEAAVRA

Sequences:

>Translated_293_residues
MLDLFLLRSFVAVVETGNFTRAGERLHLTQSTVSQQLIRLEQSLGCRLLNRSQRHVVPTEEGERLLGYAQRILRLAEEAT
VELNPGGSGGVLRLGVPEDLGGEALMPLLTRFAAERPRLRLEVECGLSHHLLRLYRNGELDLLLVKQWGADSDSHARWAE
SLCWIDSATQPVTARYEGGTDALPLVAFPVGALYRQDMIHALESRGRAWRIGYSSASLASLCAAVSAGLGVSLLPASSVQ
AGHRVLGEKDGFPVVDGLELALYARSNLGAVGRTLRDELSDLCTQRAEAAVRA
>Mature_293_residues
MLDLFLLRSFVAVVETGNFTRAGERLHLTQSTVSQQLIRLEQSLGCRLLNRSQRHVVPTEEGERLLGYAQRILRLAEEAT
VELNPGGSGGVLRLGVPEDLGGEALMPLLTRFAAERPRLRLEVECGLSHHLLRLYRNGELDLLLVKQWGADSDSHARWAE
SLCWIDSATQPVTARYEGGTDALPLVAFPVGALYRQDMIHALESRGRAWRIGYSSASLASLCAAVSAGLGVSLLPASSVQ
AGHRVLGEKDGFPVVDGLELALYARSNLGAVGRTLRDELSDLCTQRAEAAVRA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=267, Percent_Identity=32.2097378277154, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787589, Length=126, Percent_Identity=36.5079365079365, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=30.0813008130081, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=114, Percent_Identity=38.5964912280702, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=248, Percent_Identity=29.8387096774194, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=249, Percent_Identity=26.1044176706827, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=27.9352226720648, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=245, Percent_Identity=26.9387755102041, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=31.0344827586207, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31859; Mature: 31859

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLFLLRSFVAVVETGNFTRAGERLHLTQSTVSQQLIRLEQSLGCRLLNRSQRHVVPTE
CHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCC
EGERLLGYAQRILRLAEEATVELNPGGSGGVLRLGVPEDLGGEALMPLLTRFAAERPRLR
CCHHHHHHHHHHHHHHHHCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
LEVECGLSHHLLRLYRNGELDLLLVKQWGADSDSHARWAESLCWIDSATQPVTARYEGGT
EEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
DALPLVAFPVGALYRQDMIHALESRGRAWRIGYSSASLASLCAAVSAGLGVSLLPASSVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCHHHH
AGHRVLGEKDGFPVVDGLELALYARSNLGAVGRTLRDELSDLCTQRAEAAVRA
HHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDLFLLRSFVAVVETGNFTRAGERLHLTQSTVSQQLIRLEQSLGCRLLNRSQRHVVPTE
CHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCC
EGERLLGYAQRILRLAEEATVELNPGGSGGVLRLGVPEDLGGEALMPLLTRFAAERPRLR
CCHHHHHHHHHHHHHHHHCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
LEVECGLSHHLLRLYRNGELDLLLVKQWGADSDSHARWAESLCWIDSATQPVTARYEGGT
EEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
DALPLVAFPVGALYRQDMIHALESRGRAWRIGYSSASLASLCAAVSAGLGVSLLPASSVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCHHHH
AGHRVLGEKDGFPVVDGLELALYARSNLGAVGRTLRDELSDLCTQRAEAAVRA
HHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]