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The map label for this gene is algU [H]

Identifier: 108760102

GI number: 108760102

Start: 1963825

End: 1964388

Strand: Direct

Name: algU [H]

Synonym: MXAN_1661

Alternate gene names: 108760102

Gene position: 1963825-1964388 (Clockwise)

Preceding gene: 108761499

Following gene: 108759454

Centisome position: 21.49

GC content: 70.04

Gene sequence:

>564_bases
GTGACGCCGCGCGTGCCATTCGATGAAGAGGCCCTCCGGGCCGCCGTGGTGTCGGGCGACGCCGCCGCGCGAGAGGATGT
CATGCGCCACCTGTACGAGGCGCTCAGCGGGAAGCTGTACGTGCTCTGCCATGGAATCACCCGGGACCCGAGTGATGCCC
AGGACGCCGTCCAGGAGACGTTCCTCTCGATTCAACGGGCCCTGCCGCAGTTCCGGGGGGATGCGCAGCTGTCGACGTGG
GCGTATCGCATCGCGGTGCGGGCCGCCGTGGCCGCGAAGACGCGGCGCGAGCGTCACCGTGGCGACGCGGTCGACATCGA
GATGGCGGACCCTCGGGCGGGTATCGAGGAGACCTTCGAGACGCGGGAGCGGAGGCGCAGACTCGAGGTGGCGATGAGGA
CGCTCTCGCTGGAGCACCGCACCGTGCTGTCGCTCTTCGCCGTGGAAGGCCTGTCACACGCCCAGATTGCCAGCGTCCTC
GGGATTCCCGAGGGCACCGCGTGGTCGCGCTTGCACCTGGCTCGCAAGCGGCTGGCGGCGGCGCTCGAATCCACCGCCCC
ATAG

Upstream 100 bases:

>100_bases
TGCTGTTTGCCGCGGGAGTGAACCTGGGCATGACGGTCTACCTCGCTCGGACGCGCAGGCCGCGACTGCTGCGCGAGCGC
GCCGAACTCGAGGTCGCACC

Downstream 100 bases:

>100_bases
CCTGGGGCGCTCCATCCGCGTTGTCGTTCAACCCCGCGGTCTCATGGCCGCGGAGGGGAGAGGGTCATGTCCAATGTCTA
TCTGAACTTCGAGGCGTCGC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTPRVPFDEEALRAAVVSGDAAAREDVMRHLYEALSGKLYVLCHGITRDPSDAQDAVQETFLSIQRALPQFRGDAQLSTW
AYRIAVRAAVAAKTRRERHRGDAVDIEMADPRAGIEETFETRERRRRLEVAMRTLSLEHRTVLSLFAVEGLSHAQIASVL
GIPEGTAWSRLHLARKRLAAALESTAP

Sequences:

>Translated_187_residues
MTPRVPFDEEALRAAVVSGDAAAREDVMRHLYEALSGKLYVLCHGITRDPSDAQDAVQETFLSIQRALPQFRGDAQLSTW
AYRIAVRAAVAAKTRRERHRGDAVDIEMADPRAGIEETFETRERRRRLEVAMRTLSLEHRTVLSLFAVEGLSHAQIASVL
GIPEGTAWSRLHLARKRLAAALESTAP
>Mature_186_residues
TPRVPFDEEALRAAVVSGDAAAREDVMRHLYEALSGKLYVLCHGITRDPSDAQDAVQETFLSIQRALPQFRGDAQLSTWA
YRIAVRAAVAAKTRRERHRGDAVDIEMADPRAGIEETFETRERRRRLEVAMRTLSLEHRTVLSLFAVEGLSHAQIASVLG
IPEGTAWSRLHLARKRLAAALESTAP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=34.0579710144928, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20812; Mature: 20681

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRVPFDEEALRAAVVSGDAAAREDVMRHLYEALSGKLYVLCHGITRDPSDAQDAVQET
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHH
FLSIQRALPQFRGDAQLSTWAYRIAVRAAVAAKTRRERHRGDAVDIEMADPRAGIEETFE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
TRERRRRLEVAMRTLSLEHRTVLSLFAVEGLSHAQIASVLGIPEGTAWSRLHLARKRLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALESTAP
HHHHCCC
>Mature Secondary Structure 
TPRVPFDEEALRAAVVSGDAAAREDVMRHLYEALSGKLYVLCHGITRDPSDAQDAVQET
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHH
FLSIQRALPQFRGDAQLSTWAYRIAVRAAVAAKTRRERHRGDAVDIEMADPRAGIEETFE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
TRERRRRLEVAMRTLSLEHRTVLSLFAVEGLSHAQIASVLGIPEGTAWSRLHLARKRLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALESTAP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]