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The map label for this gene is exbD [H]

Identifier: 108759957

GI number: 108759957

Start: 327897

End: 328322

Strand: Reverse

Name: exbD [H]

Synonym: MXAN_0273

Alternate gene names: 108759957

Gene position: 328322-327897 (Counterclockwise)

Preceding gene: 108758897

Following gene: 108760101

Centisome position: 3.59

GC content: 65.49

Gene sequence:

>426_bases
ATGGCATTCGACCTCGGAGGCGGAAAGGGCAGCATCCGCCCGGCGATGAACGTGACGCCCCTGGTGGACGTCGTGCTCGT
CCTCCTCATCATCTTCATGGTCGTCACCCCGCTGATGACGAAGCAGATGTGGATGACGGTGCCCGCCAAGGGCGATGACC
AGGAGGCCCCTCCGCCTCCTCCCGATGCAAAGCCACCGGTGGTCCTCACGGTGGACAAGTCCGGCGTGCTGCGAATCAAC
CGGGAAGAAGTGCCCCGCGACCAAGTCGTGGCCCGGCTCCAGCGCATGCTCAACGCGCGCCCGGACAAGATTGTGTTCTT
CGACGCCAGTGATGATGTGCCGTACGGCGCCGCCATGGACGTGCTGGACCTCGCGCGAGGCGGGGACATCACGGTCGGCG
TGCTGCCGGACAAGCTCGCGGATTGA

Upstream 100 bases:

>100_bases
ACTCCGAGGTGCGCGGCCTCTTCAAGGCGATGCAGGAGCTGGGCTTCCCCGGCATCAACCTGCAGGTCGTCGACAAGCAG
AAGAACTAGGAGCGCACGCC

Downstream 100 bases:

>100_bases
TGCAGTGCCGCGGCGGACCGTGACACCAAGTTTGCGGTCCGCCGCCTGAATCGTCACAGCCCCTTCATCCAGATGCCATG
CGTGTCGCGTTCTCTACGCG

Product: ExbD/TolR family TonB system transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAFDLGGGKGSIRPAMNVTPLVDVVLVLLIIFMVVTPLMTKQMWMTVPAKGDDQEAPPPPPDAKPPVVLTVDKSGVLRIN
REEVPRDQVVARLQRMLNARPDKIVFFDASDDVPYGAAMDVLDLARGGDITVGVLPDKLAD

Sequences:

>Translated_141_residues
MAFDLGGGKGSIRPAMNVTPLVDVVLVLLIIFMVVTPLMTKQMWMTVPAKGDDQEAPPPPPDAKPPVVLTVDKSGVLRIN
REEVPRDQVVARLQRMLNARPDKIVFFDASDDVPYGAAMDVLDLARGGDITVGVLPDKLAD
>Mature_140_residues
AFDLGGGKGSIRPAMNVTPLVDVVLVLLIIFMVVTPLMTKQMWMTVPAKGDDQEAPPPPPDAKPPVVLTVDKSGVLRINR
EEVPRDQVVARLQRMLNARPDKIVFFDASDDVPYGAAMDVLDLARGGDITVGVLPDKLAD

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15230; Mature: 15099

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDLGGGKGSIRPAMNVTPLVDVVLVLLIIFMVVTPLMTKQMWMTVPAKGDDQEAPPPP
CEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCC
PDAKPPVVLTVDKSGVLRINREEVPRDQVVARLQRMLNARPDKIVFFDASDDVPYGAAMD
CCCCCCEEEEECCCCEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH
VLDLARGGDITVGVLPDKLAD
HHHHHCCCCEEEEECCHHCCC
>Mature Secondary Structure 
AFDLGGGKGSIRPAMNVTPLVDVVLVLLIIFMVVTPLMTKQMWMTVPAKGDDQEAPPPP
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCC
PDAKPPVVLTVDKSGVLRINREEVPRDQVVARLQRMLNARPDKIVFFDASDDVPYGAAMD
CCCCCCEEEEECCCCEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH
VLDLARGGDITVGVLPDKLAD
HHHHHCCCCEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]