| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is chiA1 [H]
Identifier: 108759728
GI number: 108759728
Start: 1931763
End: 1932995
Strand: Reverse
Name: chiA1 [H]
Synonym: MXAN_1630
Alternate gene names: 108759728
Gene position: 1932995-1931763 (Counterclockwise)
Preceding gene: 108758621
Following gene: 108760802
Centisome position: 21.15
GC content: 66.34
Gene sequence:
>1233_bases GTGACGGGCAGCACCAACACGGCGGTGACGTGGTCCGTGCAGGAGGGCGCGGCGGGAGGCACCGTCACGCCGGCGGGCCT GTACACCGCTCCGGCCATCGCGGGCACCTACCACGTGGTCGCGACGAGCCAGGCGGATCCCACGAAATCGGCGGTGGCCA CCGTCACCGTCCCGAACACGCCCCCGCCGCCGAGCGGCACGTGGGTGTCGGGCTACTACACCGGCTGGAACGCCGACATG TACCCGCCGGAGAAGGTGGACTTCTCCGCGCTCACGCACATCCTCGTTGGCCGCGTCACTCCCAATCCGGATGGGACCGT GAACACCCAGTTCGACAACTCGAATGGCCCGGCCATCGCGCGGACACTGTCCACGCGGGCGCACGCAGCCGGACGCAAGG CCATCATCATGGTGGGCGGCGCGGGTGAGCACGACGGCTGGGTGGGCGCGGCGTCCAACGCGAACCGCGCCCAGTTCGTC CAGAACCTGCTCAACGCGATGGATACCTTTGGCTATGACGGCCTGGATATCGACTGGGAGCCGGTGGAACAGGTGGACAA GCCGGCGTTGCTCGCGCTGATACAGGCGCTGCGCGCGGCCCGGCCGCAGATGCTGCTCACCATGCCCATCGGCTGGGTCA ACAGCAACTTCCCCGAGGATGCGGACCCGTGGTTCACCAACCTGGTCCCCTACCTGGACCAGATGAACGTGATGACCTAC GAGATGACGGGCCCCTGGGGCGGCTGGCTGTCCTGGTACACCTCCGCGCTCACGGGCGAGGCGGGCAACCACCCCACGTC CGTCTCCTCCAGCCTCAGCGCCTGGGCCAACGCGGGCATCCCCAAGAACAAGCTGGGCATGGGCATCCCGTTCTATGGCA TGGCGTGGCGGAACATCACCGGCCCGTATCAGCCGTACACGGACTGGTCTGACTACGTGGGCAGCGACAATTCCTTCACA TACAGCAAGATTCTCCAGTTGTCGGCGACGGGCGTCTACCACTGGGACGAGGCGGCGAAGGCCAGCTACGTCACCTTCGA CGTCCCCGTGGAGGACGGCACGGTGCGGTGGATTTCGTATGACTCACCGCAAACCATTGCCGCCAAGGGCGCCTTCGCCC ATGACAACGGATACGGTGGCACCATCATCTGGACCATCAACCAGGGATGCACCGACCCACAGACTGGCGCCAATCCGCTG CTCGACGCGGTGAAGAACGCCTTCCTGCCATGA
Upstream 100 bases:
>100_bases CGTGCGTGGCATGGCCACGCCGCCTCCGCCCGTGGAGGTGGCCATCACCCCCACCTCCGCCACGGTTCCGGCCGGGGGGA CGCAGGCCTTCACTGCCACG
Downstream 100 bases:
>100_bases CCCGGAGAGGGCAAGGGACCGCGCTGTGCACGCAGCGCGGCCCATGACTCCACAAGAAGTGCCCTACCTGGGGCGTCAAA ACGCCCCCCGTGAGAAGCGA
Product: putative chitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MTGSTNTAVTWSVQEGAAGGTVTPAGLYTAPAIAGTYHVVATSQADPTKSAVATVTVPNTPPPPSGTWVSGYYTGWNADM YPPEKVDFSALTHILVGRVTPNPDGTVNTQFDNSNGPAIARTLSTRAHAAGRKAIIMVGGAGEHDGWVGAASNANRAQFV QNLLNAMDTFGYDGLDIDWEPVEQVDKPALLALIQALRAARPQMLLTMPIGWVNSNFPEDADPWFTNLVPYLDQMNVMTY EMTGPWGGWLSWYTSALTGEAGNHPTSVSSSLSAWANAGIPKNKLGMGIPFYGMAWRNITGPYQPYTDWSDYVGSDNSFT YSKILQLSATGVYHWDEAAKASYVTFDVPVEDGTVRWISYDSPQTIAAKGAFAHDNGYGGTIIWTINQGCTDPQTGANPL LDAVKNAFLP
Sequences:
>Translated_410_residues MTGSTNTAVTWSVQEGAAGGTVTPAGLYTAPAIAGTYHVVATSQADPTKSAVATVTVPNTPPPPSGTWVSGYYTGWNADM YPPEKVDFSALTHILVGRVTPNPDGTVNTQFDNSNGPAIARTLSTRAHAAGRKAIIMVGGAGEHDGWVGAASNANRAQFV QNLLNAMDTFGYDGLDIDWEPVEQVDKPALLALIQALRAARPQMLLTMPIGWVNSNFPEDADPWFTNLVPYLDQMNVMTY EMTGPWGGWLSWYTSALTGEAGNHPTSVSSSLSAWANAGIPKNKLGMGIPFYGMAWRNITGPYQPYTDWSDYVGSDNSFT YSKILQLSATGVYHWDEAAKASYVTFDVPVEDGTVRWISYDSPQTIAAKGAFAHDNGYGGTIIWTINQGCTDPQTGANPL LDAVKNAFLP >Mature_409_residues TGSTNTAVTWSVQEGAAGGTVTPAGLYTAPAIAGTYHVVATSQADPTKSAVATVTVPNTPPPPSGTWVSGYYTGWNADMY PPEKVDFSALTHILVGRVTPNPDGTVNTQFDNSNGPAIARTLSTRAHAAGRKAIIMVGGAGEHDGWVGAASNANRAQFVQ NLLNAMDTFGYDGLDIDWEPVEQVDKPALLALIQALRAARPQMLLTMPIGWVNSNFPEDADPWFTNLVPYLDQMNVMTYE MTGPWGGWLSWYTSALTGEAGNHPTSVSSSLSAWANAGIPKNKLGMGIPFYGMAWRNITGPYQPYTDWSDYVGSDNSFTY SKILQLSATGVYHWDEAAKASYVTFDVPVEDGTVRWISYDSPQTIAAKGAFAHDNGYGGTIIWTINQGCTDPQTGANPLL DAVKNAFLP
Specific function: Unknown
COG id: COG3325
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 fibronectin type-III domains [H]
Homologues:
Organism=Homo sapiens, GI144226251, Length=369, Percent_Identity=22.2222222222222, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI58386720, Length=282, Percent_Identity=23.4042553191489, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI42542398, Length=282, Percent_Identity=24.822695035461, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI133893286, Length=375, Percent_Identity=21.8666666666667, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4502809, Length=348, Percent_Identity=23.2758620689655, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559362, Length=363, Percent_Identity=24.5179063360882, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17551250, Length=282, Percent_Identity=28.7234042553192, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17535565, Length=365, Percent_Identity=23.5616438356164, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563680, Length=379, Percent_Identity=24.5382585751979, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115533992, Length=351, Percent_Identity=20.5128205128205, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531695, Length=347, Percent_Identity=21.3256484149856, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17535575, Length=278, Percent_Identity=22.3021582733813, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17535579, Length=275, Percent_Identity=21.4545454545455, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI221330815, Length=380, Percent_Identity=26.0526315789474, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24655584, Length=255, Percent_Identity=28.2352941176471, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI45550474, Length=277, Percent_Identity=24.187725631769, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI21358195, Length=374, Percent_Identity=22.7272727272727, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007452, Length=396, Percent_Identity=24.7474747474747, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI28573679, Length=359, Percent_Identity=25.0696378830084, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI22024049, Length=352, Percent_Identity=25.8522727272727, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR011583 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 43860; Mature: 43729
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSTNTAVTWSVQEGAAGGTVTPAGLYTAPAIAGTYHVVATSQADPTKSAVATVTVPNT CCCCCCCEEEEEECCCCCCCCCCCCCCEECCHHCCEEEEEEECCCCCCCCEEEEEECCCC PPPPSGTWVSGYYTGWNADMYPPEKVDFSALTHILVGRVTPNPDGTVNTQFDNSNGPAIA CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEE RTLSTRAHAAGRKAIIMVGGAGEHDGWVGAASNANRAQFVQNLLNAMDTFGYDGLDIDWE HHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC PVEQVDKPALLALIQALRAARPQMLLTMPIGWVNSNFPEDADPWFTNLVPYLDQMNVMTY HHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE EMTGPWGGWLSWYTSALTGEAGNHPTSVSSSLSAWANAGIPKNKLGMGIPFYGMAWRNIT EECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHCCCC GPYQPYTDWSDYVGSDNSFTYSKILQLSATGVYHWDEAAKASYVTFDVPVEDGTVRWISY CCCCCCCCHHHHCCCCCCEEHHHHHEECCCCEEEECCCCCCEEEEEEEECCCCEEEEEEE DSPQTIAAKGAFAHDNGYGGTIIWTINQGCTDPQTGANPLLDAVKNAFLP CCCCEEEECCCEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure TGSTNTAVTWSVQEGAAGGTVTPAGLYTAPAIAGTYHVVATSQADPTKSAVATVTVPNT CCCCCCEEEEEECCCCCCCCCCCCCCEECCHHCCEEEEEEECCCCCCCCEEEEEECCCC PPPPSGTWVSGYYTGWNADMYPPEKVDFSALTHILVGRVTPNPDGTVNTQFDNSNGPAIA CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEE RTLSTRAHAAGRKAIIMVGGAGEHDGWVGAASNANRAQFVQNLLNAMDTFGYDGLDIDWE HHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC PVEQVDKPALLALIQALRAARPQMLLTMPIGWVNSNFPEDADPWFTNLVPYLDQMNVMTY HHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE EMTGPWGGWLSWYTSALTGEAGNHPTSVSSSLSAWANAGIPKNKLGMGIPFYGMAWRNIT EECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHCCCC GPYQPYTDWSDYVGSDNSFTYSKILQLSATGVYHWDEAAKASYVTFDVPVEDGTVRWISY CCCCCCCCHHHHCCCCCCEEHHHHHEECCCCEEEECCCCCCEEEEEEEECCCCEEEEEEE DSPQTIAAKGAFAHDNGYGGTIIWTINQGCTDPQTGANPLLDAVKNAFLP CCCCEEEECCCEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2203782; 8103047 [H]