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The map label for this gene is ydhM [C]

Identifier: 108759672

GI number: 108759672

Start: 1957872

End: 1958621

Strand: Reverse

Name: ydhM [C]

Synonym: MXAN_1654

Alternate gene names: 108759672

Gene position: 1958621-1957872 (Counterclockwise)

Preceding gene: 108757165

Following gene: 108761380

Centisome position: 21.43

GC content: 71.87

Gene sequence:

>750_bases
ATGGCGACGCGGAACAAGGCCGGAGCGACGGGCGGGCCCAAGCGGGGACGCCCCCGGGGCCGGACGGAGCAGGGCCACGA
GACGCGCCAGCGGCTGTATGCGACCGCGCTGGGGTTCATCTCCGCGCGGGGCTACGAGGCCACCCATCTGCGGGACATCG
CCAAGGAGGCGGGGGTGAGCGTTGGCCTGCTGTACCGGTACTTTCCCAGCAAGCGCGCCATCGTCCTGGCGCTGTACGAC
GAGTTGTCCTCGGCGTATGCGGCGCGCGCCGAGGCGTTGCCCGCCGGCTCCTGGCGGGAGCGCTTCCTGTTCGCGCTCCG
GGCAAGCCTTGGCGTGCTCGGGCCGCACCACGAGGTGCTCAAGGCGCTGATTCCCGTGCTCGTGGGCGGAGAAGAGGACG
GCCTGTTCGCGCCGCAGACGGCGTTCTCCCGGCAGCGGGTCCAGGCCGTCTTTGAAGACGCCGTCGCGGGCGCCACGGAC
GTCCCGAGCAACGCCACGGTGGCCCATGCACTGGGCCGGTTGCTCTACGTCGCGCATCTGGCCGTGGTGCTGTGGTGGCT
GCTCGACAAGAGCCCACGTCAGCGCGCCACCGAGGGCCTGGTGTCGATGCTGGCGGGCCTACTGCCCCCTGCATCGCTCC
TGCTCCGGCTGCCTGGTGCCGGAAGCATGGTCCTGGGCGCGGACGCCCTCTGCCGGCAGGCGCTCTTCGGCGAACCGGCG
CGTGCCCAGGCGGAAGAGGTGACGCGATGA

Upstream 100 bases:

>100_bases
GCACCGCTCGCCAGACCTTGAGGGTGTCCCCGCTTGCGCCCGCCCTTCACTCCAGGCATCATTTCAGTGAACAGGTTCAC
CGAAAAGAAGGGGGGAGGCC

Downstream 100 bases:

>100_bases
ATACCGCGACGCTGGGACATGCCGAGGTCTCCCTGAACGGGAAAGGCACAGGCGAGCCGCGCGCGAGCACCGCATCCCTG
GTGCCTCCCGAGGTGGGCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MATRNKAGATGGPKRGRPRGRTEQGHETRQRLYATALGFISARGYEATHLRDIAKEAGVSVGLLYRYFPSKRAIVLALYD
ELSSAYAARAEALPAGSWRERFLFALRASLGVLGPHHEVLKALIPVLVGGEEDGLFAPQTAFSRQRVQAVFEDAVAGATD
VPSNATVAHALGRLLYVAHLAVVLWWLLDKSPRQRATEGLVSMLAGLLPPASLLLRLPGAGSMVLGADALCRQALFGEPA
RAQAEEVTR

Sequences:

>Translated_249_residues
MATRNKAGATGGPKRGRPRGRTEQGHETRQRLYATALGFISARGYEATHLRDIAKEAGVSVGLLYRYFPSKRAIVLALYD
ELSSAYAARAEALPAGSWRERFLFALRASLGVLGPHHEVLKALIPVLVGGEEDGLFAPQTAFSRQRVQAVFEDAVAGATD
VPSNATVAHALGRLLYVAHLAVVLWWLLDKSPRQRATEGLVSMLAGLLPPASLLLRLPGAGSMVLGADALCRQALFGEPA
RAQAEEVTR
>Mature_248_residues
ATRNKAGATGGPKRGRPRGRTEQGHETRQRLYATALGFISARGYEATHLRDIAKEAGVSVGLLYRYFPSKRAIVLALYDE
LSSAYAARAEALPAGSWRERFLFALRASLGVLGPHHEVLKALIPVLVGGEEDGLFAPQTAFSRQRVQAVFEDAVAGATDV
PSNATVAHALGRLLYVAHLAVVLWWLLDKSPRQRATEGLVSMLAGLLPPASLLLRLPGAGSMVLGADALCRQALFGEPAR
AQAEEVTR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26717; Mature: 26586

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRNKAGATGGPKRGRPRGRTEQGHETRQRLYATALGFISARGYEATHLRDIAKEAGVS
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
VGLLYRYFPSKRAIVLALYDELSSAYAARAEALPAGSWRERFLFALRASLGVLGPHHEVL
HHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
KALIPVLVGGEEDGLFAPQTAFSRQRVQAVFEDAVAGATDVPSNATVAHALGRLLYVAHL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVLWWLLDKSPRQRATEGLVSMLAGLLPPASLLLRLPGAGSMVLGADALCRQALFGEPA
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCHHCCHHHHHHHHHCCCCC
RAQAEEVTR
HHHHHHCCC
>Mature Secondary Structure 
ATRNKAGATGGPKRGRPRGRTEQGHETRQRLYATALGFISARGYEATHLRDIAKEAGVS
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
VGLLYRYFPSKRAIVLALYDELSSAYAARAEALPAGSWRERFLFALRASLGVLGPHHEVL
HHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
KALIPVLVGGEEDGLFAPQTAFSRQRVQAVFEDAVAGATDVPSNATVAHALGRLLYVAHL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVLWWLLDKSPRQRATEGLVSMLAGLLPPASLLLRLPGAGSMVLGADALCRQALFGEPA
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCHHCCHHHHHHHHHCCCCC
RAQAEEVTR
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA