| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is speA [H]
Identifier: 108759559
GI number: 108759559
Start: 3193853
End: 3195943
Strand: Reverse
Name: speA [H]
Synonym: MXAN_2742
Alternate gene names: 108759559
Gene position: 3195943-3193853 (Counterclockwise)
Preceding gene: 108760013
Following gene: 108758872
Centisome position: 34.97
GC content: 66.67
Gene sequence:
>2091_bases GTGATCGTCCGTTGTTCACGGGAGTCCACCCCATCTACCCCAGGGAGCCTCGAGACGCCGATGCCCGTAAACGCCCCTCC CCACCGCTGGACCCTCGCCGACGCGCATGAGCTGTACGGAATCCGGAACTGGGGCAACCCCTACTTCGGCATCAATGAGA AGGGCCATGTCATCGTCCACCCGGACGGTCCCCAGGCCCCGAACATGGACCTGAAGGAGCTGGTCGACGAAGTGCGCCGC CGGGGCATCGGCCTGCCGCTGCTCATCCGCTTCACGGACGTGCTGCGCCACCGCGTGGTCCACCTGAACGAAGCCTTCCG TAAGGCCATGAGCGATCAGGGGTTCAAGGGCGGCTACCGCGGCGTGTACCCCATCAAGGTGAACCAGCACCGCTACGTGG TGGAGACCCTCATCGAGGCGGGCAAGGGCTACAACTACGGGCTGGAGGCCGGCAGCAAGCCGGAGCTGCTCGCGGTGATG GCGCTGTTGGAGAACGAGAACGCGCTCGTCATCTGCAACGGCTACAAGGACGAGGAGTACATCGAGACGGCGCTCTTCTA CTCGCGCCTGGGCCGCAACGTCATCCTGGTGGTGGAGAAGCCCAGCGAGCTGCCGCTCATCGCGGAGGTCGCCCGGCGCA CGGGCATCGCCCCCCGGCTGGGCATTCGCGTGAAGCTGTCCACGCGCGGCGCCGGCAAGTGGGAGGCCAGCGGCGGCGAC CGCTCCAAGTTCGGCCTGACCTCCTCCGAGCTGATGAACTGCATCGGCTTCATGAAGGACGCGGGCCTGCTCAACTCCTT CGAGCTGCTGCACTTCCACCTGGGCAGCCAGATTTCCAACATCCGCAACGTGAAGAACGCGCTGCGTGAGGTGGGCTGCT TCTACGTGGAGGTGGCCCGTCAGGGCGCGCCGCTGAAGTACCTGGACGTGGGCGGCGGCCTGGGCGTGGACTACGACGGC TCCCAGACGAACTTCGCCTCTTCCATGAACTACACCACGGAGGAGTACGCCAACGACGTGGTGTTCGGCGTCATGGAGGC CTGCGACCGGGCCGGCGTACCGCACCCCACGCTGGTGTCGGAGTCCGGCCGCGCCGTGGTGGCGCACCACGCGGTGCTGG TGGTGGACGTGCTGGGCACCAGTGAGTTCGGCCCGGCGCCGGTCCCCGACAAGGTGGACGAGAAGGCCCCCTCCGTGGTG CGCAACCTCTGGTCCACCTACCGCGAGGTCACCAACAAGAACCTGCTGGAGGCGTGGCACGACGCGCAGGACGCCAAGGA GGAGAGCCTCACCCTCTTCTCGCTGGGCCACCTGTCGCTGGAGCAGCGCGTGGCGGCGGAGAACATCTACTGGGCCACCT GCCACAAGATCATGCGCATCGCGCGTGAGCAGGGCGAGATTCCCGAGGAGCTGGACTCCCTGGAGAAGGCGCTCAACGAC ACGTACTTCTGCAACTTCTCCGTGTTCCAGTCGCTGCCGGACTCGTGGGCCATCGACCAGCTCTTCCCGATGATGCCCAT CCACCGGCTGGCGGAGAAGCCGACCCGCCGCGCGACGCTGGCGGACATCACCTGCGACTCGGACGGGAAGATCGAGCACT TCATCGACAAGCGCGAGGTGAAGGACGCCCTTGAGCTGCACGCGCTCAACGATGACGACTACTACCTGGGCATCTTCATG GTGGGCGCCTACCAGGAGATCCTCGGCGACCTCCACAACCTGTTCGGCGATACGCACGCCGTGCAGGTGTCGCTGGGGCC CAACGGGGGCTACCTCATCGACAATGTGGTGGCCGGCGACACGGTAACGGAGGTGCTCAACTACGTCAGCTACACCAAGG ACGACCTGGTGGCGAAGCTGCGCAAGTTCACTGAGGCCGCGCTGCGCCAGGGCCGCATCACCCTGGACGAATCGCGCAAC CTGCTGCGCATGTACGAGGATGGCCTGTCCGGCTACACGTACCTGGAGCGCGAGGTGGACGCGAGCTTCGGCAGCAGCGC CAGCCAGCTCCGTCTGGTGCCCACGCCGGACGCCTCGGGCGCCCGGCCCACGACACCGCCCGCCGGCGCGTCGGGAACGT CGGGCACCTGA
Upstream 100 bases:
>100_bases GAGGAGGAGCACCGGGCGGCCGCCCCGCCAGCCTGCTTGCCCTCCGCACAAGCGGCTGTTGAATACCGAGAGGCTTTCCG ATAGTTCCCGCGCGATTCCT
Downstream 100 bases:
>100_bases GCCCCGCGCCAGAATGAAGTCCTCGCCCTCTGTCGCTCGCCGCGGCAGGGGGCTTTTTCATCCCCGGGCGTTCCGTCAGT GGCCCGCGATGAGAGGCTCT
Product: arginine decarboxylase
Products: NA
Alternate protein names: ADC [H]
Number of amino acids: Translated: 696; Mature: 696
Protein sequence:
>696_residues MIVRCSRESTPSTPGSLETPMPVNAPPHRWTLADAHELYGIRNWGNPYFGINEKGHVIVHPDGPQAPNMDLKELVDEVRR RGIGLPLLIRFTDVLRHRVVHLNEAFRKAMSDQGFKGGYRGVYPIKVNQHRYVVETLIEAGKGYNYGLEAGSKPELLAVM ALLENENALVICNGYKDEEYIETALFYSRLGRNVILVVEKPSELPLIAEVARRTGIAPRLGIRVKLSTRGAGKWEASGGD RSKFGLTSSELMNCIGFMKDAGLLNSFELLHFHLGSQISNIRNVKNALREVGCFYVEVARQGAPLKYLDVGGGLGVDYDG SQTNFASSMNYTTEEYANDVVFGVMEACDRAGVPHPTLVSESGRAVVAHHAVLVVDVLGTSEFGPAPVPDKVDEKAPSVV RNLWSTYREVTNKNLLEAWHDAQDAKEESLTLFSLGHLSLEQRVAAENIYWATCHKIMRIAREQGEIPEELDSLEKALND TYFCNFSVFQSLPDSWAIDQLFPMMPIHRLAEKPTRRATLADITCDSDGKIEHFIDKREVKDALELHALNDDDYYLGIFM VGAYQEILGDLHNLFGDTHAVQVSLGPNGGYLIDNVVAGDTVTEVLNYVSYTKDDLVAKLRKFTEAALRQGRITLDESRN LLRMYEDGLSGYTYLEREVDASFGSSASQLRLVPTPDASGARPTTPPAGASGTSGT
Sequences:
>Translated_696_residues MIVRCSRESTPSTPGSLETPMPVNAPPHRWTLADAHELYGIRNWGNPYFGINEKGHVIVHPDGPQAPNMDLKELVDEVRR RGIGLPLLIRFTDVLRHRVVHLNEAFRKAMSDQGFKGGYRGVYPIKVNQHRYVVETLIEAGKGYNYGLEAGSKPELLAVM ALLENENALVICNGYKDEEYIETALFYSRLGRNVILVVEKPSELPLIAEVARRTGIAPRLGIRVKLSTRGAGKWEASGGD RSKFGLTSSELMNCIGFMKDAGLLNSFELLHFHLGSQISNIRNVKNALREVGCFYVEVARQGAPLKYLDVGGGLGVDYDG SQTNFASSMNYTTEEYANDVVFGVMEACDRAGVPHPTLVSESGRAVVAHHAVLVVDVLGTSEFGPAPVPDKVDEKAPSVV RNLWSTYREVTNKNLLEAWHDAQDAKEESLTLFSLGHLSLEQRVAAENIYWATCHKIMRIAREQGEIPEELDSLEKALND TYFCNFSVFQSLPDSWAIDQLFPMMPIHRLAEKPTRRATLADITCDSDGKIEHFIDKREVKDALELHALNDDDYYLGIFM VGAYQEILGDLHNLFGDTHAVQVSLGPNGGYLIDNVVAGDTVTEVLNYVSYTKDDLVAKLRKFTEAALRQGRITLDESRN LLRMYEDGLSGYTYLEREVDASFGSSASQLRLVPTPDASGARPTTPPAGASGTSGT >Mature_696_residues MIVRCSRESTPSTPGSLETPMPVNAPPHRWTLADAHELYGIRNWGNPYFGINEKGHVIVHPDGPQAPNMDLKELVDEVRR RGIGLPLLIRFTDVLRHRVVHLNEAFRKAMSDQGFKGGYRGVYPIKVNQHRYVVETLIEAGKGYNYGLEAGSKPELLAVM ALLENENALVICNGYKDEEYIETALFYSRLGRNVILVVEKPSELPLIAEVARRTGIAPRLGIRVKLSTRGAGKWEASGGD RSKFGLTSSELMNCIGFMKDAGLLNSFELLHFHLGSQISNIRNVKNALREVGCFYVEVARQGAPLKYLDVGGGLGVDYDG SQTNFASSMNYTTEEYANDVVFGVMEACDRAGVPHPTLVSESGRAVVAHHAVLVVDVLGTSEFGPAPVPDKVDEKAPSVV RNLWSTYREVTNKNLLEAWHDAQDAKEESLTLFSLGHLSLEQRVAAENIYWATCHKIMRIAREQGEIPEELDSLEKALND TYFCNFSVFQSLPDSWAIDQLFPMMPIHRLAEKPTRRATLADITCDSDGKIEHFIDKREVKDALELHALNDDDYYLGIFM VGAYQEILGDLHNLFGDTHAVQVSLGPNGGYLIDNVVAGDTVTEVLNYVSYTKDDLVAKLRKFTEAALRQGRITLDESRN LLRMYEDGLSGYTYLEREVDASFGSSASQLRLVPTPDASGARPTTPPAGASGTSGT
Specific function: Catalyzes the biosynthesis of agmatine from arginine [H]
COG id: COG1166
COG function: function code E; Arginine decarboxylase (spermidine biosynthesis)
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789307, Length=628, Percent_Identity=42.8343949044586, Blast_Score=534, Evalue=1e-153,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002985 - InterPro: IPR022643 - InterPro: IPR022644 - InterPro: IPR022653 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 76967; Mature: 76967
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS00878 ODR_DC_2_1 ; PS00879 ODR_DC_2_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVRCSRESTPSTPGSLETPMPVNAPPHRWTLADAHELYGIRNWGNPYFGINEKGHVIVH CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHCEECCCCCCCCCCCCCCEEEEC PDGPQAPNMDLKELVDEVRRRGIGLPLLIRFTDVLRHRVVHLNEAFRKAMSDQGFKGGYR CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVYPIKVNQHRYVVETLIEAGKGYNYGLEAGSKPELLAVMALLENENALVICNGYKDEEY CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHH IETALFYSRLGRNVILVVEKPSELPLIAEVARRTGIAPRLGIRVKLSTRGAGKWEASGGD HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC RSKFGLTSSELMNCIGFMKDAGLLNSFELLHFHLGSQISNIRNVKNALREVGCFYVEVAR CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH QGAPLKYLDVGGGLGVDYDGSQTNFASSMNYTTEEYANDVVFGVMEACDRAGVPHPTLVS CCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEC ESGRAVVAHHAVLVVDVLGTSEFGPAPVPDKVDEKAPSVVRNLWSTYREVTNKNLLEAWH CCCCEEEEEHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH DAQDAKEESLTLFSLGHLSLEQRVAAENIYWATCHKIMRIAREQGEIPEELDSLEKALND HHHHHHHHCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC TYFCNFSVFQSLPDSWAIDQLFPMMPIHRLAEKPTRRATLADITCDSDGKIEHFIDKREV CEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH KDALELHALNDDDYYLGIFMVGAYQEILGDLHNLFGDTHAVQVSLGPNGGYLIDNVVAGD HHHHHHEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCH TVTEVLNYVSYTKDDLVAKLRKFTEAALRQGRITLDESRNLLRMYEDGLSGYTYLEREVD HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH ASFGSSASQLRLVPTPDASGARPTTPPAGASGTSGT HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIVRCSRESTPSTPGSLETPMPVNAPPHRWTLADAHELYGIRNWGNPYFGINEKGHVIVH CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHCEECCCCCCCCCCCCCCEEEEC PDGPQAPNMDLKELVDEVRRRGIGLPLLIRFTDVLRHRVVHLNEAFRKAMSDQGFKGGYR CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVYPIKVNQHRYVVETLIEAGKGYNYGLEAGSKPELLAVMALLENENALVICNGYKDEEY CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHH IETALFYSRLGRNVILVVEKPSELPLIAEVARRTGIAPRLGIRVKLSTRGAGKWEASGGD HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC RSKFGLTSSELMNCIGFMKDAGLLNSFELLHFHLGSQISNIRNVKNALREVGCFYVEVAR CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH QGAPLKYLDVGGGLGVDYDGSQTNFASSMNYTTEEYANDVVFGVMEACDRAGVPHPTLVS CCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEC ESGRAVVAHHAVLVVDVLGTSEFGPAPVPDKVDEKAPSVVRNLWSTYREVTNKNLLEAWH CCCCEEEEEHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH DAQDAKEESLTLFSLGHLSLEQRVAAENIYWATCHKIMRIAREQGEIPEELDSLEKALND HHHHHHHHCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC TYFCNFSVFQSLPDSWAIDQLFPMMPIHRLAEKPTRRATLADITCDSDGKIEHFIDKREV CEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH KDALELHALNDDDYYLGIFMVGAYQEILGDLHNLFGDTHAVQVSLGPNGGYLIDNVVAGD HHHHHHEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCH TVTEVLNYVSYTKDDLVAKLRKFTEAALRQGRITLDESRNLLRMYEDGLSGYTYLEREVD HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH ASFGSSASQLRLVPTPDASGARPTTPPAGASGTSGT HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14621292 [H]