| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is pcbC [H]
Identifier: 108759555
GI number: 108759555
Start: 99616
End: 100686
Strand: Direct
Name: pcbC [H]
Synonym: MXAN_0088
Alternate gene names: 108759555
Gene position: 99616-100686 (Clockwise)
Preceding gene: 108762425
Following gene: 108759330
Centisome position: 1.09
GC content: 70.31
Gene sequence:
>1071_bases ATGACAGGTCCGGATTCCGCACGGGGCGGCTTGCCCGTCATCGACATGGCGTCACTGTTCGATGCATCCCGCGTCACCGA GCGTGCGCGCGTCGCGCGTGAAATCGAGCAGGCCTGTCGCGACAGCGGCTTCTTCTACGTGACGGGCCACGGCGTGTCCG GCGAGGTGCTCGCGCGGCTGGAGCGGGAGAGCCACCGCTTCTTTGCGCTGCCCCGGGTGGCGAAGGAGGCCATCGCCATG TCGATGGGCGGTGTCGCGTGGCGAGGCTGGTTTCCACTCGGGGGGGAGCTGACCTCGGGGCGCCCGGACCGGAAGGAGGG GTTGTATCTGGGCACGGAGCTCGGAAGCGAGCATCCGCGCGTAAAGGCCGGCTGGCCGTTGCACGGCGCCAACCTGTGGC CCGCGGAGGTGCCGGAGCTGCGCGCGGCGGTGCTCGACTACGTGGCGGCCTGCACGCGCGCCGCGCATGCGCTGATGGAG GGCATGGCGCTGAGCCTGGGCCTGGACGCGGACTACTTCCGGCGGCACTACACGGCGGACCCGACGGTGCTCTTCCGCAT CTTCCATTACCCCGCGGAGCCCCAGCACGAGGAGGTGAGCTGGGGCGTGGGCGAGCACACCGACTACGGGCTGCTCACGC TGCTGGCCCAGGACGACAACGGCGGGTTGCAGGTGAAGACGCCGCGCGGCTGGGTGGAGGTACCGCCGCTGCCCGGGACG CTGGTGTGCAACATCGGCGACATGCTCGACCGGATGACAGGCGGGTGGTACCGCTCCACGCCGCACCGGGTGAAGAACGT GAGCGGCAAGGACAGGCTGTCCTTCCCACTCTTCTTCGACCCGGACTTCGCCGCCGAGGTCCACCCCCTGCCACGCGGCG CGGGCGCTGACGTAGATGATGACCGCGCCCGCCGCTGGGATGGCGCCAGCGTCCACGCCTTCCAGGGCACGTACGGCGAC TACCTGCTGGGCAAGGTGTCCAAGGTGTTTCCGGAGCTGGTGCGGCGGGTGTGGGAGCGCGCGCCCACGGCACTGCCGGA GGAGACACCCCGAGGACCGTTACCGCGTTGA
Upstream 100 bases:
>100_bases GCGGTGTGGGGAGCTTCCGGGGAGGAATGCGTTGTCATGGAGGCGGGCGGACTCTCGCGCCGCGCCCTGCTGGGGTCCAG ACCTGTGTAGGCTCCCGGGA
Downstream 100 bases:
>100_bases CGGAGCCCGGGGCGCATGCTTGAGAGCGCTGCGCCGGATGACGCGCTTCGGCGCGCCCAAACCGCTCACCGACCAGGAGA CATCACGATGATGACCGTCA
Product: 2OG-Fe(II) oxygenase family oxidoreductase
Products: NA
Alternate protein names: IPNS [H]
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MTGPDSARGGLPVIDMASLFDASRVTERARVAREIEQACRDSGFFYVTGHGVSGEVLARLERESHRFFALPRVAKEAIAM SMGGVAWRGWFPLGGELTSGRPDRKEGLYLGTELGSEHPRVKAGWPLHGANLWPAEVPELRAAVLDYVAACTRAAHALME GMALSLGLDADYFRRHYTADPTVLFRIFHYPAEPQHEEVSWGVGEHTDYGLLTLLAQDDNGGLQVKTPRGWVEVPPLPGT LVCNIGDMLDRMTGGWYRSTPHRVKNVSGKDRLSFPLFFDPDFAAEVHPLPRGAGADVDDDRARRWDGASVHAFQGTYGD YLLGKVSKVFPELVRRVWERAPTALPEETPRGPLPR
Sequences:
>Translated_356_residues MTGPDSARGGLPVIDMASLFDASRVTERARVAREIEQACRDSGFFYVTGHGVSGEVLARLERESHRFFALPRVAKEAIAM SMGGVAWRGWFPLGGELTSGRPDRKEGLYLGTELGSEHPRVKAGWPLHGANLWPAEVPELRAAVLDYVAACTRAAHALME GMALSLGLDADYFRRHYTADPTVLFRIFHYPAEPQHEEVSWGVGEHTDYGLLTLLAQDDNGGLQVKTPRGWVEVPPLPGT LVCNIGDMLDRMTGGWYRSTPHRVKNVSGKDRLSFPLFFDPDFAAEVHPLPRGAGADVDDDRARRWDGASVHAFQGTYGD YLLGKVSKVFPELVRRVWERAPTALPEETPRGPLPR >Mature_355_residues TGPDSARGGLPVIDMASLFDASRVTERARVAREIEQACRDSGFFYVTGHGVSGEVLARLERESHRFFALPRVAKEAIAMS MGGVAWRGWFPLGGELTSGRPDRKEGLYLGTELGSEHPRVKAGWPLHGANLWPAEVPELRAAVLDYVAACTRAAHALMEG MALSLGLDADYFRRHYTADPTVLFRIFHYPAEPQHEEVSWGVGEHTDYGLLTLLAQDDNGGLQVKTPRGWVEVPPLPGTL VCNIGDMLDRMTGGWYRSTPHRVKNVSGKDRLSFPLFFDPDFAAEVHPLPRGAGADVDDDRARRWDGASVHAFQGTYGDY LLGKVSKVFPELVRRVWERAPTALPEETPRGPLPR
Specific function: Removes, in the presence of oxygen, 4 hydrogen atoms from delta-L-(alpha-aminoadipyl)-L-cysteinyl-D-valine (ACV) to form the azetidinone and thiazolidine rings of isopenicillin [H]
COG id: COG3491
COG function: function code R; Isopenicillin N synthase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe2OG dioxygenase domain [H]
Homologues:
Organism=Drosophila melanogaster, GI28572124, Length=304, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI85816264, Length=302, Percent_Identity=24.5033112582781, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002057 - InterPro: IPR002283 - InterPro: IPR005123 [H]
Pfam domain/function: PF03171 2OG-FeII_Oxy [H]
EC number: =1.21.3.1 [H]
Molecular weight: Translated: 39324; Mature: 39193
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPDSARGGLPVIDMASLFDASRVTERARVAREIEQACRDSGFFYVTGHGVSGEVLARL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH ERESHRFFALPRVAKEAIAMSMGGVAWRGWFPLGGELTSGRPDRKEGLYLGTELGSEHPR HHHCCCEEECHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC VKAGWPLHGANLWPAEVPELRAAVLDYVAACTRAAHALMEGMALSLGLDADYFRRHYTAD EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCC PTVLFRIFHYPAEPQHEEVSWGVGEHTDYGLLTLLAQDDNGGLQVKTPRGWVEVPPLPGT HHHEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEECCCCCCE LVCNIGDMLDRMTGGWYRSTPHRVKNVSGKDRLSFPLFFDPDFAAEVHPLPRGAGADVDD EEECHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC DRARRWDGASVHAFQGTYGDYLLGKVSKVFPELVRRVWERAPTALPEETPRGPLPR HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TGPDSARGGLPVIDMASLFDASRVTERARVAREIEQACRDSGFFYVTGHGVSGEVLARL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH ERESHRFFALPRVAKEAIAMSMGGVAWRGWFPLGGELTSGRPDRKEGLYLGTELGSEHPR HHHCCCEEECHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC VKAGWPLHGANLWPAEVPELRAAVLDYVAACTRAAHALMEGMALSLGLDADYFRRHYTAD EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCC PTVLFRIFHYPAEPQHEEVSWGVGEHTDYGLLTLLAQDDNGGLQVKTPRGWVEVPPLPGT HHHEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEECCCCCCE LVCNIGDMLDRMTGGWYRSTPHRVKNVSGKDRLSFPLFFDPDFAAEVHPLPRGAGADVDD EEECHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC DRARRWDGASVHAFQGTYGDYLLGKVSKVFPELVRRVWERAPTALPEETPRGPLPR HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1956290 [H]