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The map label for this gene is ynbD [H]

Identifier: 108759523

GI number: 108759523

Start: 1966710

End: 1967423

Strand: Direct

Name: ynbD [H]

Synonym: MXAN_1665

Alternate gene names: 108759523

Gene position: 1966710-1967423 (Clockwise)

Preceding gene: 108757178

Following gene: 108759503

Centisome position: 21.52

GC content: 64.43

Gene sequence:

>714_bases
GTGCTTTGCATGAAGTACGCCTTCGTTTTCGCCATGGCTGCCGTGTTGATTGCCTTCCTGGCCCTGCGACTGGGCGGCGT
CGCGTGGCTTCTGTTGTGGCCTGGGGTGAGCTTCATCCTGGTGGCACTCGCCTACGCTGGACTGGGCGAACACGCTTTCG
GCAAGCGCGTGGACGGGCGGATGCAGCCCTGGGCAATCATCTTGCTCCTGCCTTATCTCTTGCTGACATGGGGCGCCTGG
CATCTGGTTCGATGGCTGTCGCGAGAGCGTGCGTTCGACGAAGTGGTGCCAGGCGTTTTCATTGGAAGACGCTTGTTGGC
GGGAGAGCTTCCCGACGGCATCGTGACCGTGCTCGATCTGACGTCTGAGTTCGTCGAACCGGAAGGAATTCGTCGCGCGG
GCCGGTATGTCTCCCTGCCCATCCTTGATGCTTCGATTCTGCCCGTAGCGAGAGTGACCCCTGTCCTGCGTGAGCTGGCT
GTCGGACCTGATGCGCTCTACATCCACTGTGCGCAAGGGCATGGACGCACCGGGATGATTGCGGCCGCGCTCCTCATTGC
CCGAGGTGATGCGTTGGATGCGTCGACCGCGCTCTCGATGGTGCAGCGCGCGCGGCCCGCGGTGCGACTCTCTGCGACGC
AATCGCGGGCCCTTGCGGAGCTGGCCACGGCGCTTCTCGCGGCGCGGCAGGGCGCTGGCGCTGCTCTCCCCTGA

Upstream 100 bases:

>100_bases
GCGGCGGCTTTCACGCACCTGGGGCCACCAGTCCCGAGATGTCGCGTGTGATTCGCCCTTCCTGGATGGACGTGTAGCCG
CCCACGGTTCCGGTTACGCT

Downstream 100 bases:

>100_bases
GTTGACCGATTTGACGGGCGCAAATCCAATGGCGGTGACGGTGCCGGCGACGGCCTCGGCGCTGGCGGCCCTGCTGGTCC
GCCTGGCGCCGCGTGCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLCMKYAFVFAMAAVLIAFLALRLGGVAWLLLWPGVSFILVALAYAGLGEHAFGKRVDGRMQPWAIILLLPYLLLTWGAW
HLVRWLSRERAFDEVVPGVFIGRRLLAGELPDGIVTVLDLTSEFVEPEGIRRAGRYVSLPILDASILPVARVTPVLRELA
VGPDALYIHCAQGHGRTGMIAAALLIARGDALDASTALSMVQRARPAVRLSATQSRALAELATALLAARQGAGAALP

Sequences:

>Translated_237_residues
MLCMKYAFVFAMAAVLIAFLALRLGGVAWLLLWPGVSFILVALAYAGLGEHAFGKRVDGRMQPWAIILLLPYLLLTWGAW
HLVRWLSRERAFDEVVPGVFIGRRLLAGELPDGIVTVLDLTSEFVEPEGIRRAGRYVSLPILDASILPVARVTPVLRELA
VGPDALYIHCAQGHGRTGMIAAALLIARGDALDASTALSMVQRARPAVRLSATQSRALAELATALLAARQGAGAALP
>Mature_237_residues
MLCMKYAFVFAMAAVLIAFLALRLGGVAWLLLWPGVSFILVALAYAGLGEHAFGKRVDGRMQPWAIILLLPYLLLTWGAW
HLVRWLSRERAFDEVVPGVFIGRRLLAGELPDGIVTVLDLTSEFVEPEGIRRAGRYVSLPILDASILPVARVTPVLRELA
VGPDALYIHCAQGHGRTGMIAAALLIARGDALDASTALSMVQRARPAVRLSATQSRALAELATALLAARQGAGAALP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=197, Percent_Identity=28.4263959390863, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 25441; Mature: 25441

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCMKYAFVFAMAAVLIAFLALRLGGVAWLLLWPGVSFILVALAYAGLGEHAFGKRVDGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCC
MQPWAIILLLPYLLLTWGAWHLVRWLSRERAFDEVVPGVFIGRRLLAGELPDGIVTVLDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHH
TSEFVEPEGIRRAGRYVSLPILDASILPVARVTPVLRELAVGPDALYIHCAQGHGRTGMI
HHHHCCCHHHHHCCCEEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
AAALLIARGDALDASTALSMVQRARPAVRLSATQSRALAELATALLAARQGAGAALP
HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLCMKYAFVFAMAAVLIAFLALRLGGVAWLLLWPGVSFILVALAYAGLGEHAFGKRVDGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCC
MQPWAIILLLPYLLLTWGAWHLVRWLSRERAFDEVVPGVFIGRRLLAGELPDGIVTVLDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHH
TSEFVEPEGIRRAGRYVSLPILDASILPVARVTPVLRELAVGPDALYIHCAQGHGRTGMI
HHHHCCCHHHHHCCCEEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
AAALLIARGDALDASTALSMVQRARPAVRLSATQSRALAELATALLAARQGAGAALP
HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]