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The map label for this gene is ydaL [H]

Identifier: 108759380

GI number: 108759380

Start: 3557672

End: 3558307

Strand: Reverse

Name: ydaL [H]

Synonym: MXAN_3030

Alternate gene names: 108759380

Gene position: 3558307-3557672 (Counterclockwise)

Preceding gene: 108761868

Following gene: 108758156

Centisome position: 38.93

GC content: 69.03

Gene sequence:

>636_bases
ATGAAGGACCAGGAGAAGAAGGAGGCGCAGGAGAAGGCCGCGGCGGAGGTCGCGAAGCGCAAGGCCGCGGCGCCCCCGCC
CCGGGCCACGAAGGCGCCCAAGGTCCGCGAGGAGGACGATGCCTCCCTTTTCTTCTCCGCCATGGACGGTGTGCAGCAGC
TCACCCACCGGGGCGAAGCGCCCGCGCCCAACCCGCGCCTGCCTGCAATCATCGATGAAAACGCGGAGGCGCTCGCGCAG
CTCTCCGAGCTGGTCGCCGGCCAGGGCGACTTCGACTTCACCGGCACGGATGAGTGCATCGAAGGAGCGAGCCCCGGCAT
CGACCGGAACCTGATGCGCGCGCTGCGCCGGGGCGACTTCGCCATCCAGGGACAGCTGGACCTGCACGGGAAGACACAGA
GCGAGGCGCGCGACGCGCTGGAACGCTTCCTGGGTGACAGCCGCCGCGCGAAGAAGCGCTGCGTGCTCGTCGTGCACGGT
CGCGGTTTGAACTCCAAGGACCAGATTCCCGTGCTGAAGGAGCGGCTCAAGGGATGGCTGTCCGAGAAGCGGATTGGCCG
GATGGTGCTGGCGTTCGCTACCGCACGGCCTCAGGACGGAGGCACCGGCGCGGTGTACGTGCTGCTCCGGCGGTAG

Upstream 100 bases:

>100_bases
CGACGAGGACGCACTTTCCGCCATGAGTCAGCAGCGCAACGGCCCCAAGAAGAAGGAAGCGGCTTTCAGCAACAACCCCT
TCAAGTCCGCCATCCAGGTG

Downstream 100 bases:

>100_bases
TCTTTACGCGAGCCCGACACTGTGCATACATGCCGCCATGGCACGCGATCTGATCGACCTGCATATCCACGTGGGTGGCG
CTGTGGCGCCCCACATCCTC

Product: Smr domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKDQEKKEAQEKAAAEVAKRKAAAPPPRATKAPKVREEDDASLFFSAMDGVQQLTHRGEAPAPNPRLPAIIDENAEALAQ
LSELVAGQGDFDFTGTDECIEGASPGIDRNLMRALRRGDFAIQGQLDLHGKTQSEARDALERFLGDSRRAKKRCVLVVHG
RGLNSKDQIPVLKERLKGWLSEKRIGRMVLAFATARPQDGGTGAVYVLLRR

Sequences:

>Translated_211_residues
MKDQEKKEAQEKAAAEVAKRKAAAPPPRATKAPKVREEDDASLFFSAMDGVQQLTHRGEAPAPNPRLPAIIDENAEALAQ
LSELVAGQGDFDFTGTDECIEGASPGIDRNLMRALRRGDFAIQGQLDLHGKTQSEARDALERFLGDSRRAKKRCVLVVHG
RGLNSKDQIPVLKERLKGWLSEKRIGRMVLAFATARPQDGGTGAVYVLLRR
>Mature_211_residues
MKDQEKKEAQEKAAAEVAKRKAAAPPPRATKAPKVREEDDASLFFSAMDGVQQLTHRGEAPAPNPRLPAIIDENAEALAQ
LSELVAGQGDFDFTGTDECIEGASPGIDRNLMRALRRGDFAIQGQLDLHGKTQSEARDALERFLGDSRRAKKRCVLVVHG
RGLNSKDQIPVLKERLKGWLSEKRIGRMVLAFATARPQDGGTGAVYVLLRR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=176, Percent_Identity=31.25, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 23108; Mature: 23108

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDQEKKEAQEKAAAEVAKRKAAAPPPRATKAPKVREEDDASLFFSAMDGVQQLTHRGEA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PAPNPRLPAIIDENAEALAQLSELVAGQGDFDFTGTDECIEGASPGIDRNLMRALRRGDF
CCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCE
AIQGQLDLHGKTQSEARDALERFLGDSRRAKKRCVLVVHGRGLNSKDQIPVLKERLKGWL
EEEEEEECCCCCHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
SEKRIGRMVLAFATARPQDGGTGAVYVLLRR
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKDQEKKEAQEKAAAEVAKRKAAAPPPRATKAPKVREEDDASLFFSAMDGVQQLTHRGEA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PAPNPRLPAIIDENAEALAQLSELVAGQGDFDFTGTDECIEGASPGIDRNLMRALRRGDF
CCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCE
AIQGQLDLHGKTQSEARDALERFLGDSRRAKKRCVLVVHGRGLNSKDQIPVLKERLKGWL
EEEEEEECCCCCHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
SEKRIGRMVLAFATARPQDGGTGAVYVLLRR
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]