| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is slt [H]
Identifier: 108758688
GI number: 108758688
Start: 3887698
End: 3890103
Strand: Direct
Name: slt [H]
Synonym: MXAN_3344
Alternate gene names: 108758688
Gene position: 3887698-3890103 (Clockwise)
Preceding gene: 108761379
Following gene: 108759696
Centisome position: 42.54
GC content: 70.95
Gene sequence:
>2406_bases ATGAAGCCCTTCCTTTCCAAGCTCGCCGTCGCCGCCTCCGCGCTCCTGATGACCGCGCAGGCACCCGCCCCGAAGGCGGT TTCGTCCACCCCGGCCGAGCCCGAGGCGTCCGAAGCGCCGGCCCAGCACCCCAGCAACGCGCCTTCAGAGGCGCAGTTGT CGCCCCCTCCCGACTCGGAGAAGGCGCCGCTTCCGGTGGGCTACGTGGAGGTGCTCAACCCCGCCTTCCCCAATGCCGCG CCGCCCACACCGGTGGTGCACCGGGGCCGCCGCTACGCGCTGGAGGACCTGGCGCCTTACTTCGGCGAGGGCAAGAAGAA GGAGGCCCGTGACGCGTTCGACCGTGGACAGTACACGCGCGCCCGCGAGCTGCTGAAGGACGAGGGCGACAGCCCGCCGG TGCGCTACCTGCGCGCCCTGGCCGCCGTCCGCGCCGGCGATGACGCGTCCGCCGCCAAGGAATTCGCCGCGCTGGTCCCG GACTATCCCGCGCTGAAGGACCGCTGCCTGACGCATGGCGGCGTGGCGCTGGAGAGCCTGCGCCGCTTCGATGAGGCCGC GGTGCTGCTGGAGCAGGTGCCACCCGAGTCCAAGCTGTACGTGGACGCGCGGCTGGCCCTGTCGCGCGTGCTGCGCAAGA AGAAGGACGCGGCGGGCGCCATGGCCGCGCTGGAGCCGCTCACGTCGCGCGCGGCGCCCAGCTGGGGCCGCAACGTGGGC GCCGAGGCGCTGATGGCCATCGCCGACATCGCCGCGGAGAAGAAGGACAAGGCCGCCGAGCGCGCCGCGCTGTGGCGCCT GTGGGCCGCGCACCCGCTGTCCGCCTTGTCGAAGCAGGCCGAGAAGCGCCTCAAGGGGCAGACGCCGCCCGTCGATGCGA GGGTGGGGCGTGGCGAGGCGCTGGTGGAGCTGCACCGGAACAAGGCCGGCCTGGAGCAGTTGGAGCCGCTGCTGCCGAAG CTGGCGCTTCCGGACCCGCTGGCCTGCCGCGCGCACTTCGCCTTCGGCAAGGGCATGCGCAAGGAGCGCCAGCACACGCG CGCCATCCAGGTGCTGACGCCCGTGGCGGAGAAGTGCCAGGACCGCGACCTGCTGGCGCGCGTGCTGTACGTGCTCGGCT CGTCGCGCTCCATCGTCGACCAGGCGCGGGGCACGGAGACCTACGAGCGGCTGGCGCGCGAGTTCCCGGACCACTCGTTC GCGGATGACGGCCTCTTCTACGCGGCCGACCTCTACCTGAAGACGGGCCGTCCGAAGGAGGCCATGGCCCGCCTGGACAC GCTGGCCCGGCTGTACCCGCAGGGGGACTTCCTGGGCGAGGCGCTCTTCAAGGCGTTCTGGATTGCTCGCACCACGGGCG TGGAGGACTCCGGCCTGTCGTTCCTGGACCGCATCGAGGCGCAGTTCGCCAAGGCGGACGAGAGCTACGACGTGGAGCGC GCGCGCTACTGGCGGGCGCGGACGATGCAAGAGAAGGGCAACATCCAGGGCGCGGCGGAGCTGTTCGAGAAGCTCTCCGT GGACCACCCGGCGACCTACTACGGGCTGATGGCGCGCTCGCAGCTGGCGAAGGTGGACCCGCCACGGCTGGAGAAGGTGT CCGCCGAAATCTTCGCCGTGCCCGAGGCCGCCAGCCCCTGGCCGCTGTTCGCCGGCCCCATGGGCGAGGACCCGCACTTC CGCGCGGGCGTGGAGCTGTACCGCCTGGGCTTCAAGGAAGCCGTGTCGTCCGAGATGCTGGCCGTCAACCGGACCAATCT GCCCGCGGAGTCCGTGCGCCTGCTGGTGCTGGTGCTGCACGAGGCCGGGGACGAGCGCTCCGCCCACGCGGTGGCGCGGC TCGCCCTGCGCAAGGACTTGAGCGGGCGCATCACTCCGGAGACGCGCGTGGTGTGGGAGGTGGCCTATCCCAACGCCTTC CGCGACAGCATCGAGAAGCACACCGCGGACGCGGGCGTGGAGCCGGACCTGCTCCAGGCGTTGATGCGGGAGGAGAGCGC GCTGGACCCCAAGGCGCTCTCGTGGGCGGGAGCGATGGGCCTCACCCAGTTGATGCCGTCCACCGCGAAGGGCGTGGCGC GCGAGCTGAAGCTCAAGCGCTTCAGCGTGGACCAGTTGCTCCAGCCCGACCTCAACATCCGCATGGGGGCCCACTATCTT GGCGGCTTGCTCAAGCGCTTCAACGGGCACACGCCCTATGCGGTGGGCAGCTACAACGCCGGTCCCGGCGCGGTGAATCG TTGGAGGTCCGACAGGCCGGACCTGGCGCTGGACGCATGGGTGGAGGAAATCCCCATCTCCGAGACACGCGGTTACATCA AGCGCGTGCTGCGCTCCTTCAACACGTACCAACTGCTGTACGGACGGGCGCCCAAGCTGCCGGTGCTCAAGAGCGCCGCG AAGTAG
Upstream 100 bases:
>100_bases CGGACAGTCTAACCTGTGTCAGCCTCCGGAAATTTTCCATGACCTGCCGGTTGTCCTGGGGCGAGCCCGCGCGCATCTCC CTGGGACCCAGCCCCCGCGT
Downstream 100 bases:
>100_bases GTGCGCTGCAGCCATCCGGGCGCCTGCTGGGTGGTGTCGGTGGAGAATTCGTGCGGAATGGGGCGCGGACGCCGCGGGTT ATGTCCACGCCCGGAAAAAG
Product: transglycosylase SLT domain-containing protein
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MKPFLSKLAVAASALLMTAQAPAPKAVSSTPAEPEASEAPAQHPSNAPSEAQLSPPPDSEKAPLPVGYVEVLNPAFPNAA PPTPVVHRGRRYALEDLAPYFGEGKKKEARDAFDRGQYTRARELLKDEGDSPPVRYLRALAAVRAGDDASAAKEFAALVP DYPALKDRCLTHGGVALESLRRFDEAAVLLEQVPPESKLYVDARLALSRVLRKKKDAAGAMAALEPLTSRAAPSWGRNVG AEALMAIADIAAEKKDKAAERAALWRLWAAHPLSALSKQAEKRLKGQTPPVDARVGRGEALVELHRNKAGLEQLEPLLPK LALPDPLACRAHFAFGKGMRKERQHTRAIQVLTPVAEKCQDRDLLARVLYVLGSSRSIVDQARGTETYERLAREFPDHSF ADDGLFYAADLYLKTGRPKEAMARLDTLARLYPQGDFLGEALFKAFWIARTTGVEDSGLSFLDRIEAQFAKADESYDVER ARYWRARTMQEKGNIQGAAELFEKLSVDHPATYYGLMARSQLAKVDPPRLEKVSAEIFAVPEAASPWPLFAGPMGEDPHF RAGVELYRLGFKEAVSSEMLAVNRTNLPAESVRLLVLVLHEAGDERSAHAVARLALRKDLSGRITPETRVVWEVAYPNAF RDSIEKHTADAGVEPDLLQALMREESALDPKALSWAGAMGLTQLMPSTAKGVARELKLKRFSVDQLLQPDLNIRMGAHYL GGLLKRFNGHTPYAVGSYNAGPGAVNRWRSDRPDLALDAWVEEIPISETRGYIKRVLRSFNTYQLLYGRAPKLPVLKSAA K
Sequences:
>Translated_801_residues MKPFLSKLAVAASALLMTAQAPAPKAVSSTPAEPEASEAPAQHPSNAPSEAQLSPPPDSEKAPLPVGYVEVLNPAFPNAA PPTPVVHRGRRYALEDLAPYFGEGKKKEARDAFDRGQYTRARELLKDEGDSPPVRYLRALAAVRAGDDASAAKEFAALVP DYPALKDRCLTHGGVALESLRRFDEAAVLLEQVPPESKLYVDARLALSRVLRKKKDAAGAMAALEPLTSRAAPSWGRNVG AEALMAIADIAAEKKDKAAERAALWRLWAAHPLSALSKQAEKRLKGQTPPVDARVGRGEALVELHRNKAGLEQLEPLLPK LALPDPLACRAHFAFGKGMRKERQHTRAIQVLTPVAEKCQDRDLLARVLYVLGSSRSIVDQARGTETYERLAREFPDHSF ADDGLFYAADLYLKTGRPKEAMARLDTLARLYPQGDFLGEALFKAFWIARTTGVEDSGLSFLDRIEAQFAKADESYDVER ARYWRARTMQEKGNIQGAAELFEKLSVDHPATYYGLMARSQLAKVDPPRLEKVSAEIFAVPEAASPWPLFAGPMGEDPHF RAGVELYRLGFKEAVSSEMLAVNRTNLPAESVRLLVLVLHEAGDERSAHAVARLALRKDLSGRITPETRVVWEVAYPNAF RDSIEKHTADAGVEPDLLQALMREESALDPKALSWAGAMGLTQLMPSTAKGVARELKLKRFSVDQLLQPDLNIRMGAHYL GGLLKRFNGHTPYAVGSYNAGPGAVNRWRSDRPDLALDAWVEEIPISETRGYIKRVLRSFNTYQLLYGRAPKLPVLKSAA K >Mature_801_residues MKPFLSKLAVAASALLMTAQAPAPKAVSSTPAEPEASEAPAQHPSNAPSEAQLSPPPDSEKAPLPVGYVEVLNPAFPNAA PPTPVVHRGRRYALEDLAPYFGEGKKKEARDAFDRGQYTRARELLKDEGDSPPVRYLRALAAVRAGDDASAAKEFAALVP DYPALKDRCLTHGGVALESLRRFDEAAVLLEQVPPESKLYVDARLALSRVLRKKKDAAGAMAALEPLTSRAAPSWGRNVG AEALMAIADIAAEKKDKAAERAALWRLWAAHPLSALSKQAEKRLKGQTPPVDARVGRGEALVELHRNKAGLEQLEPLLPK LALPDPLACRAHFAFGKGMRKERQHTRAIQVLTPVAEKCQDRDLLARVLYVLGSSRSIVDQARGTETYERLAREFPDHSF ADDGLFYAADLYLKTGRPKEAMARLDTLARLYPQGDFLGEALFKAFWIARTTGVEDSGLSFLDRIEAQFAKADESYDVER ARYWRARTMQEKGNIQGAAELFEKLSVDHPATYYGLMARSQLAKVDPPRLEKVSAEIFAVPEAASPWPLFAGPMGEDPHF RAGVELYRLGFKEAVSSEMLAVNRTNLPAESVRLLVLVLHEAGDERSAHAVARLALRKDLSGRITPETRVVWEVAYPNAF RDSIEKHTADAGVEPDLLQALMREESALDPKALSWAGAMGLTQLMPSTAKGVARELKLKRFSVDQLLQPDLNIRMGAHYL GGLLKRFNGHTPYAVGSYNAGPGAVNRWRSDRPDLALDAWVEEIPISETRGYIKRVLRSFNTYQLLYGRAPKLPVLKSAA K
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=324, Percent_Identity=26.8518518518519, Blast_Score=103, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 87958; Mature: 87958
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPFLSKLAVAASALLMTAQAPAPKAVSSTPAEPEASEAPAQHPSNAPSEAQLSPPPDSE CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KAPLPVGYVEVLNPAFPNAAPPTPVVHRGRRYALEDLAPYFGEGKKKEARDAFDRGQYTR CCCCCCHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH ARELLKDEGDSPPVRYLRALAAVRAGDDASAAKEFAALVPDYPALKDRCLTHGGVALESL HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHH RRFDEAAVLLEQVPPESKLYVDARLALSRVLRKKKDAAGAMAALEPLTSRAAPSWGRNVG HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH AEALMAIADIAAEKKDKAAERAALWRLWAAHPLSALSKQAEKRLKGQTPPVDARVGRGEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH LVELHRNKAGLEQLEPLLPKLALPDPLACRAHFAFGKGMRKERQHTRAIQVLTPVAEKCQ HHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC DRDLLARVLYVLGSSRSIVDQARGTETYERLAREFPDHSFADDGLFYAADLYLKTGRPKE CHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHH AMARLDTLARLYPQGDFLGEALFKAFWIARTTGVEDSGLSFLDRIEAQFAKADESYDVER HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHH ARYWRARTMQEKGNIQGAAELFEKLSVDHPATYYGLMARSQLAKVDPPRLEKVSAEIFAV HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHHEEC PEAASPWPLFAGPMGEDPHFRAGVELYRLGFKEAVSSEMLAVNRTNLPAESVRLLVLVLH CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH EAGDERSAHAVARLALRKDLSGRITPETRVVWEVAYPNAFRDSIEKHTADAGVEPDLLQA HCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH LMREESALDPKALSWAGAMGLTQLMPSTAKGVARELKLKRFSVDQLLQPDLNIRMGAHYL HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCCEEECHHHH GGLLKRFNGHTPYAVGSYNAGPGAVNRWRSDRPDLALDAWVEEIPISETRGYIKRVLRSF HHHHHHHCCCCCEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC NTYQLLYGRAPKLPVLKSAAK CCHHHHHCCCCCCCHHHCCCC >Mature Secondary Structure MKPFLSKLAVAASALLMTAQAPAPKAVSSTPAEPEASEAPAQHPSNAPSEAQLSPPPDSE CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KAPLPVGYVEVLNPAFPNAAPPTPVVHRGRRYALEDLAPYFGEGKKKEARDAFDRGQYTR CCCCCCHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH ARELLKDEGDSPPVRYLRALAAVRAGDDASAAKEFAALVPDYPALKDRCLTHGGVALESL HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHH RRFDEAAVLLEQVPPESKLYVDARLALSRVLRKKKDAAGAMAALEPLTSRAAPSWGRNVG HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH AEALMAIADIAAEKKDKAAERAALWRLWAAHPLSALSKQAEKRLKGQTPPVDARVGRGEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH LVELHRNKAGLEQLEPLLPKLALPDPLACRAHFAFGKGMRKERQHTRAIQVLTPVAEKCQ HHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC DRDLLARVLYVLGSSRSIVDQARGTETYERLAREFPDHSFADDGLFYAADLYLKTGRPKE CHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHH AMARLDTLARLYPQGDFLGEALFKAFWIARTTGVEDSGLSFLDRIEAQFAKADESYDVER HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHH ARYWRARTMQEKGNIQGAAELFEKLSVDHPATYYGLMARSQLAKVDPPRLEKVSAEIFAV HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHHEEC PEAASPWPLFAGPMGEDPHFRAGVELYRLGFKEAVSSEMLAVNRTNLPAESVRLLVLVLH CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH EAGDERSAHAVARLALRKDLSGRITPETRVVWEVAYPNAFRDSIEKHTADAGVEPDLLQA HCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH LMREESALDPKALSWAGAMGLTQLMPSTAKGVARELKLKRFSVDQLLQPDLNIRMGAHYL HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCCEEECHHHH GGLLKRFNGHTPYAVGSYNAGPGAVNRWRSDRPDLALDAWVEEIPISETRGYIKRVLRSF HHHHHHHCCCCCEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC NTYQLLYGRAPKLPVLKSAAK CCHHHHHCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]