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The map label for this gene is rlmM [H]

Identifier: 108758667

GI number: 108758667

Start: 6656744

End: 6657766

Strand: Direct

Name: rlmM [H]

Synonym: MXAN_5346

Alternate gene names: 108758667

Gene position: 6656744-6657766 (Clockwise)

Preceding gene: 108762781

Following gene: 108758686

Centisome position: 72.83

GC content: 73.31

Gene sequence:

>1023_bases
ATGCCGGCCCGGACGCTGGCCGCCCGGCCTGGCCGCTGGCTGTGGACCTGCCGCGCGGGTTTCGAGGCCCACCTCTTCGA
GGAACTGGAATGGGCCGGCGCCGAGCCCCGTCTGCTGGGCGAAGCCCTGGTGGAGAGTGACGCCGTCTCCGGCCCTCCGC
CCGCCTTCGCCCGCGCAGGCTATCAGGTCGCTGCCACCCTGACAGCCACGAATCCCGAAGCCATCGCCGACGCGGCGGCC
CGTGCCGTGCTGGCGCTTCCCGGGCGGACGCCCTGGGCGGTGCAGGCCTTCACGCCCGACACCCCGCGTGGCAACGCCCT
GGCCCCTGTTGCGGAAGCCCTGGAATCCGCCGTGTCCGCCAGGCTGCCGGCAGAACGCCGCATCGAGGACGCCCAGCGGG
CACGCGAGGCGGGGGCGCTGCTGGTGTCCCTGTGTGTGGCGCCGGATGAAGTGACGGTGGTGGGCGCGGTGCACGCGCGC
GAGGCCGTGTCCCTGGCGGCGGGCGGACGCAGGCGCATGCGGCGGGCTGGAGACGCGCCGTCGCGCGCGGCCATGAAGCT
GGAGGAGGCCCTGGACGGACTGGCCTTCGAGCCTGGGCGCGGCGATGTGTGCGTGGACCTGGGCGCGGCGCCGGGCGGCT
GGACGCAGCGGTTGGTGAGCCGCGGCGCGAAGGTGGTGGCGGTGGACCCGGCCCGGCTGATGCCGGAGCTGACCGGGAAC
CCGCGCGTGAAGCACGTCCAGGAGAGCGCCTTCGCCTATGCGCCCGACGAGCCGGCGGACTGGCTCTTCTGCGACATGGC
GTGGCGCCCCCTGGAAGTGGCGCAGTTGCTGGCCAAATGGGGCCGCCGCGGTTGGGCGCAGCACCTGGTGGCCAACATCA
AGCTGCCCATGAAGGACAAGAACCCCATCCTGCTGCGGGTGCGCCACACGCTCGGCCAGGAGGGCGGCTGGGAGGGGCTC
ACCGTCCGCCAGCTCTACCATGACCGGGATGAGGTCACCGTCACCGCGCACAAGATGAAGTGA

Upstream 100 bases:

>100_bases
AGCGCAGCCTAACCGCCAGGGCCCTGCCCCCGGGGGCAAGCCCCCTGCACACACCGCGCCGCCCGCCCCCAGGGTCCCTC
CCCGGGCCAAGGTCCCCGCC

Downstream 100 bases:

>100_bases
GCCCCTGCGCATTGGCGATGGACGCGCTACACAAGGAGCGCAATGCCCTACCCACTCGACGACGCCACGGCCACCGCCCT
CATCGCCCTCCATCCCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA 2'-O-ribose methyltransferase rlmM [H]

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MPARTLAARPGRWLWTCRAGFEAHLFEELEWAGAEPRLLGEALVESDAVSGPPPAFARAGYQVAATLTATNPEAIADAAA
RAVLALPGRTPWAVQAFTPDTPRGNALAPVAEALESAVSARLPAERRIEDAQRAREAGALLVSLCVAPDEVTVVGAVHAR
EAVSLAAGGRRRMRRAGDAPSRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSRGAKVVAVDPARLMPELTGN
PRVKHVQESAFAYAPDEPADWLFCDMAWRPLEVAQLLAKWGRRGWAQHLVANIKLPMKDKNPILLRVRHTLGQEGGWEGL
TVRQLYHDRDEVTVTAHKMK

Sequences:

>Translated_340_residues
MPARTLAARPGRWLWTCRAGFEAHLFEELEWAGAEPRLLGEALVESDAVSGPPPAFARAGYQVAATLTATNPEAIADAAA
RAVLALPGRTPWAVQAFTPDTPRGNALAPVAEALESAVSARLPAERRIEDAQRAREAGALLVSLCVAPDEVTVVGAVHAR
EAVSLAAGGRRRMRRAGDAPSRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSRGAKVVAVDPARLMPELTGN
PRVKHVQESAFAYAPDEPADWLFCDMAWRPLEVAQLLAKWGRRGWAQHLVANIKLPMKDKNPILLRVRHTLGQEGGWEGL
TVRQLYHDRDEVTVTAHKMK
>Mature_339_residues
PARTLAARPGRWLWTCRAGFEAHLFEELEWAGAEPRLLGEALVESDAVSGPPPAFARAGYQVAATLTATNPEAIADAAAR
AVLALPGRTPWAVQAFTPDTPRGNALAPVAEALESAVSARLPAERRIEDAQRAREAGALLVSLCVAPDEVTVVGAVHARE
AVSLAAGGRRRMRRAGDAPSRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSRGAKVVAVDPARLMPELTGNP
RVKHVQESAFAYAPDEPADWLFCDMAWRPLEVAQLLAKWGRRGWAQHLVANIKLPMKDKNPILLRVRHTLGQEGGWEGLT
VRQLYHDRDEVTVTAHKMK

Specific function: Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA [H]

COG id: COG2933

COG function: function code R; Predicted SAM-dependent methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RlmE family. RlmM subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789171, Length=181, Percent_Identity=37.0165745856354, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011224
- InterPro:   IPR002877 [H]

Pfam domain/function: PF01728 FtsJ [H]

EC number: NA

Molecular weight: Translated: 36656; Mature: 36525

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARTLAARPGRWLWTCRAGFEAHLFEELEWAGAEPRLLGEALVESDAVSGPPPAFARAG
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHCC
YQVAATLTATNPEAIADAAARAVLALPGRTPWAVQAFTPDTPRGNALAPVAEALESAVSA
EEEEEEEECCCHHHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
RLPAERRIEDAQRAREAGALLVSLCVAPDEVTVVGAVHAREAVSLAAGGRRRMRRAGDAP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHCCCCC
SRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSRGAKVVAVDPARLMPELTGN
HHHHHHHHHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHCCCCC
PRVKHVQESAFAYAPDEPADWLFCDMAWRPLEVAQLLAKWGRRGWAQHLVANIKLPMKDK
CCHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
NPILLRVRHTLGQEGGWEGLTVRQLYHDRDEVTVTAHKMK
CCEEEEEEHHCCCCCCCCCEEHHHHHCCCCCEEEEEECCC
>Mature Secondary Structure 
PARTLAARPGRWLWTCRAGFEAHLFEELEWAGAEPRLLGEALVESDAVSGPPPAFARAG
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHCC
YQVAATLTATNPEAIADAAARAVLALPGRTPWAVQAFTPDTPRGNALAPVAEALESAVSA
EEEEEEEECCCHHHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
RLPAERRIEDAQRAREAGALLVSLCVAPDEVTVVGAVHAREAVSLAAGGRRRMRRAGDAP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHCCCCC
SRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSRGAKVVAVDPARLMPELTGN
HHHHHHHHHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHCCCCC
PRVKHVQESAFAYAPDEPADWLFCDMAWRPLEVAQLLAKWGRRGWAQHLVANIKLPMKDK
CCHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
NPILLRVRHTLGQEGGWEGLTVRQLYHDRDEVTVTAHKMK
CCEEEEEEHHCCCCCCCCCEEHHHHHCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA