Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 108758656

GI number: 108758656

Start: 3909235

End: 3910047

Strand: Reverse

Name: yjbJ [H]

Synonym: MXAN_3363

Alternate gene names: 108758656

Gene position: 3910047-3909235 (Counterclockwise)

Preceding gene: 108762513

Following gene: 108759445

Centisome position: 42.78

GC content: 68.88

Gene sequence:

>813_bases
TTGCTCCGTCGGCAGGTCAGTACATCCGTACGAGATGAGTGCACGGGGCGCGAGCGGCACGGCGGCGCCAGGAGGGGTGG
GATGAGGGGTTGGACGGTGGCGGTGGCGGCTTGGATGGTGGGGACGGGGGCGGTCGCGTTTCCGGTGCAGGTGCCGGATG
GCGCCCAGGGCGAGGGGCCGGAGGTGACGGAGCTGCGCGCGAAACTGGCCGAGCGCGACGCCGAGTTGAAGGCGACCCTG
GCGAAGCTGCACCTCTACGAGGATGAGGCCCACTACGCCGAGGCCGAGGCCCTGGGCATCACGGAGATGGTGAAGGCCTC
TGGGCTCCCCGCCCGGCAGCAGCGCCGGCTGGCGGTGGCCATCGTCCGCGAGGCGGCTCGCAACGACATCGACCCGCTCC
TGGTGGTGGCAGTGATCCGCTGCGAGAGTTCCTTCAACAACTACGCGGTCTCCCACGTCGGGGCCATGGGCCTGATGCAG
GTGATGCCGGACACCGGCACCTGGCTGGCGGACAAGGCCGGCCTGCAACTGGGCCGCACCAGCAACCTCTTCGACTCGGA
GACCAACGTGGAGCTGGGGACCGCGTACCTGGCGGACCTCATCCAGCGCTTCGGCACCGTGGAGAAGGCCCTGGTCGCCT
ACAACGCCGGCCCCGGGCTGGCCCGCCGCATCCTGGCCAAGAAGGAAGCGCGCACGAAGTTCCTGGCCGGCTACCCCGCC
AAGGTCGTGAAGGAATTCCGCAAGCTGAAGGCCGCTCAGGAGAAGCAGCTCACTCTGCGAGAGGCCCAGAAGACGAATGG
CCAGAAGAGCTGA

Upstream 100 bases:

>100_bases
TTCCGCCGGGGAATCCAGCGCGCCAGAGACGGCAAATTCGTGGGCGCTCTTAAGGAGAAACACGCCACGTGCGACCTCTG
GCACGCGGGCTGCTTAGGCG

Downstream 100 bases:

>100_bases
GCGCTGAGCAACAAGCCATGCGACGGCTGCACGACAGTCGCGAGAAAGTTGCGATGTGGGGGGTAACCAAACGCGCGAAC
CCTGTGCACTGTGCGCCGGG

Product: transglycosylase SLT domain-containing protein

Products: N-Acetylmuramic Acid Residues; N-Acetylglucosamine Residues [C]

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLRRQVSTSVRDECTGRERHGGARRGGMRGWTVAVAAWMVGTGAVAFPVQVPDGAQGEGPEVTELRAKLAERDAELKATL
AKLHLYEDEAHYAEAEALGITEMVKASGLPARQQRRLAVAIVREAARNDIDPLLVVAVIRCESSFNNYAVSHVGAMGLMQ
VMPDTGTWLADKAGLQLGRTSNLFDSETNVELGTAYLADLIQRFGTVEKALVAYNAGPGLARRILAKKEARTKFLAGYPA
KVVKEFRKLKAAQEKQLTLREAQKTNGQKS

Sequences:

>Translated_270_residues
MLRRQVSTSVRDECTGRERHGGARRGGMRGWTVAVAAWMVGTGAVAFPVQVPDGAQGEGPEVTELRAKLAERDAELKATL
AKLHLYEDEAHYAEAEALGITEMVKASGLPARQQRRLAVAIVREAARNDIDPLLVVAVIRCESSFNNYAVSHVGAMGLMQ
VMPDTGTWLADKAGLQLGRTSNLFDSETNVELGTAYLADLIQRFGTVEKALVAYNAGPGLARRILAKKEARTKFLAGYPA
KVVKEFRKLKAAQEKQLTLREAQKTNGQKS
>Mature_270_residues
MLRRQVSTSVRDECTGRERHGGARRGGMRGWTVAVAAWMVGTGAVAFPVQVPDGAQGEGPEVTELRAKLAERDAELKATL
AKLHLYEDEAHYAEAEALGITEMVKASGLPARQQRRLAVAIVREAARNDIDPLLVVAVIRCESSFNNYAVSHVGAMGLMQ
VMPDTGTWLADKAGLQLGRTSNLFDSETNVELGTAYLADLIQRFGTVEKALVAYNAGPGLARRILAKKEARTKFLAGYPA
KVVKEFRKLKAAQEKQLTLREAQKTNGQKS

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=104, Percent_Identity=40.3846153846154, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082191, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 29359; Mature: 29359

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRQVSTSVRDECTGRERHGGARRGGMRGWTVAVAAWMVGTGAVAFPVQVPDGAQGEGP
CCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
EVTELRAKLAERDAELKATLAKLHLYEDEAHYAEAEALGITEMVKASGLPARQQRRLAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVREAARNDIDPLLVVAVIRCESSFNNYAVSHVGAMGLMQVMPDTGTWLADKAGLQLGRT
HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
SNLFDSETNVELGTAYLADLIQRFGTVEKALVAYNAGPGLARRILAKKEARTKFLAGYPA
CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH
KVVKEFRKLKAAQEKQLTLREAQKTNGQKS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRRQVSTSVRDECTGRERHGGARRGGMRGWTVAVAAWMVGTGAVAFPVQVPDGAQGEGP
CCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
EVTELRAKLAERDAELKATLAKLHLYEDEAHYAEAEALGITEMVKASGLPARQQRRLAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVREAARNDIDPLLVVAVIRCESSFNNYAVSHVGAMGLMQVMPDTGTWLADKAGLQLGRT
HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
SNLFDSETNVELGTAYLADLIQRFGTVEKALVAYNAGPGLARRILAKKEARTKFLAGYPA
CCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH
KVVKEFRKLKAAQEKQLTLREAQKTNGQKS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]