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The map label for this gene is ymdB [C]

Identifier: 108758530

GI number: 108758530

Start: 1949926

End: 1950459

Strand: Reverse

Name: ymdB [C]

Synonym: MXAN_1646

Alternate gene names: 108758530

Gene position: 1950459-1949926 (Counterclockwise)

Preceding gene: 108760080

Following gene: 108757491

Centisome position: 21.34

GC content: 67.98

Gene sequence:

>534_bases
ATGAGCGATGAGCGATTGGTGCTGACGCGGGGAGACATCACCCAGGTCCAAGCGGATGCGATTGTGAACGCAGCCAACTC
CACACTGTTGGGAGGCGGAGGCGTCGACGGGGCCATCCACCGAGCGGCCGGCCCCGGGCTTCTGGCCGAATGCCGAACCC
TGGGCCGTTGCCCTCCGGGAGAAGCTCGCATCACCGGAGGCCATGCCCTTCCCGCCAAACACGTCATCCATGCCGTGGGG
CCCGTGTGGCAAGGAGGAAGCAGCGGCGAGGAGACCGTGCTCGCGCGCTGCTACCGGCGGGCCTTCTCCCTGATGGAACA
GCACGGCCTTGGCACCATCGCCTTCCCGTCCATCTCCACGGGCGCCTATGGGTACCCCATCGAGCGGGCGGCGCGAATCG
CCTTGCGCGAGATTCTGGCCGCGCTCCAGCGCATGCCGACCCTCCAGCGCGTCACCGTGGTGCTGTTCAGCGACAGGGAC
CTCGACGTGTACCAACGCGCACGTCAGGCGCTGGAGCCCACCCCTTCGGCCTGA

Upstream 100 bases:

>100_bases
GTGTCTCGGAGTGGATTGGACATGAGCGCAGGATAGACCGACGTCCCGCTGCCCCGACACGGAACCTGCGCCAGGATTTG
AACCCGACAGAGGGGATGAC

Downstream 100 bases:

>100_bases
AGGGTTCGCGACGCGCCAGACTGGCGGGGCTCGCGCGCGGAGACGGCGATGCACCACTGCGCGGCCCAGTAACACAGCAT
GATGGCGTAGCCGGAGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSDERLVLTRGDITQVQADAIVNAANSTLLGGGGVDGAIHRAAGPGLLAECRTLGRCPPGEARITGGHALPAKHVIHAVG
PVWQGGSSGEETVLARCYRRAFSLMEQHGLGTIAFPSISTGAYGYPIERAARIALREILAALQRMPTLQRVTVVLFSDRD
LDVYQRARQALEPTPSA

Sequences:

>Translated_177_residues
MSDERLVLTRGDITQVQADAIVNAANSTLLGGGGVDGAIHRAAGPGLLAECRTLGRCPPGEARITGGHALPAKHVIHAVG
PVWQGGSSGEETVLARCYRRAFSLMEQHGLGTIAFPSISTGAYGYPIERAARIALREILAALQRMPTLQRVTVVLFSDRD
LDVYQRARQALEPTPSA
>Mature_176_residues
SDERLVLTRGDITQVQADAIVNAANSTLLGGGGVDGAIHRAAGPGLLAECRTLGRCPPGEARITGGHALPAKHVIHAVGP
VWQGGSSGEETVLARCYRRAFSLMEQHGLGTIAFPSISTGAYGYPIERAARIALREILAALQRMPTLQRVTVVLFSDRDL
DVYQRARQALEPTPSA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=167, Percent_Identity=50.8982035928144, Blast_Score=167, Evalue=3e-42,
Organism=Homo sapiens, GI13569840, Length=167, Percent_Identity=51.497005988024, Blast_Score=167, Evalue=4e-42,
Organism=Homo sapiens, GI154813199, Length=170, Percent_Identity=32.9411764705882, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI207450721, Length=164, Percent_Identity=33.5365853658537, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI8923143, Length=164, Percent_Identity=33.5365853658537, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI20336746, Length=175, Percent_Identity=29.1428571428571, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI226371718, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226371716, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226371714, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226371712, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226371710, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226371706, Length=165, Percent_Identity=29.6969696969697, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI93141018, Length=178, Percent_Identity=26.9662921348315, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI93141020, Length=178, Percent_Identity=26.9662921348315, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4758496, Length=178, Percent_Identity=26.9662921348315, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI165377137, Length=163, Percent_Identity=31.2883435582822, Blast_Score=70, Evalue=9e-13,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=45.1807228915663, Blast_Score=149, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17538214, Length=166, Percent_Identity=43.9759036144578, Blast_Score=131, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=35.6687898089172, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18764; Mature: 18633

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDERLVLTRGDITQVQADAIVNAANSTLLGGGGVDGAIHRAAGPGLLAECRTLGRCPPG
CCCCCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCC
EARITGGHALPAKHVIHAVGPVWQGGSSGEETVLARCYRRAFSLMEQHGLGTIAFPSIST
CCEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
GAYGYPIERAARIALREILAALQRMPTLQRVTVVLFSDRDLDVYQRARQALEPTPSA
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDERLVLTRGDITQVQADAIVNAANSTLLGGGGVDGAIHRAAGPGLLAECRTLGRCPPG
CCCCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCC
EARITGGHALPAKHVIHAVGPVWQGGSSGEETVLARCYRRAFSLMEQHGLGTIAFPSIST
CCEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
GAYGYPIERAARIALREILAALQRMPTLQRVTVVLFSDRDLDVYQRARQALEPTPSA
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]